Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 1.3e-230 802.7 404 100.0
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.7e-174 616.3 388 80.2
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 2.2e-174 615.9 388 80.4
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 5.4e-141 505.0 383 68.9
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 3.8e-134 482.3 351 68.7
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 1.1e-133 480.7 388 64.7
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 9.2e-133 477.6 381 62.5
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 3.5e-132 475.7 377 65.0
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.0e-131 474.2 396 61.1
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.9e-130 469.9 349 67.0
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.9e-130 469.9 377 64.7
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 1.9e-130 469.9 383 61.6
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 3.3e-130 469.2 385 64.2
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 9.6e-130 467.6 360 65.3
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.2e-129 467.2 377 64.5
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.1e-129 466.5 379 63.1
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 2.8e-129 466.1 340 69.1
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 4.7e-129 465.3 340 68.8
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 1.1e-128 464.2 356 66.3
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.4e-128 463.8 340 68.8
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 1.8e-128 463.4 364 64.8
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 2.0e-127 459.9 389 62.0
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 1.3e-126 457.2 355 67.3
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 5.4e-125 451.8 386 60.1
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.2e-124 450.7 345 64.6
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 5.1e-123 445.3 367 63.2
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 6.6e-123 444.9 332 66.3
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 1.1e-122 444.1 351 63.5
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 1.9e-122 443.4 371 59.8
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.9e-122 443.4 355 64.5
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.9e-122 443.4 328 67.4
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 2.5e-122 443.0 381 61.9
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 4.3e-122 442.2 345 65.5
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 5.6e-122 441.8 355 64.5
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 9.6e-122 441.0 336 66.4
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 1.3e-121 440.7 390 60.3
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 2.8e-121 439.5 295 71.9
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 8.1e-121 438.0 335 66.6
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 1.1e-120 437.6 348 62.4
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.4e-120 437.2 377 61.0
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 1.5e-119 433.7 392 58.4
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 2.6e-119 433.0 341 65.4
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 3.4e-119 432.6 351 62.4
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 9.9e-119 431.0 384 58.3
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.7e-118 430.3 393 58.0
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.9e-118 429.5 386 58.8
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 4.9e-118 428.7 347 62.2
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.4e-117 426.4 281 74.4
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 3.2e-117 426.0 341 64.8
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.2e-117 426.0 391 57.5
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 4.2e-117 425.6 345 60.0
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 4.2e-117 425.6 365 60.3
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 5.4e-117 425.2 365 59.5
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 5.4e-117 425.2 340 64.1
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 5.4e-117 425.2 391 60.4
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 7.1e-117 424.9 365 59.5
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 1.2e-116 424.1 395 57.5
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 2.1e-116 423.3 334 65.9
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 2.1e-116 423.3 379 59.6
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 2.7e-116 422.9 341 62.8
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 3.5e-116 422.5 391 59.8
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 4.6e-116 422.2 354 61.0
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 6.0e-116 421.8 342 63.5
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 1.3e-115 420.6 340 63.8
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 2.3e-115 419.9 370 58.9
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.9e-114 416.8 388 57.5
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 3.3e-114 416.0 353 61.2
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 4.3e-114 415.6 388 55.7
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 7.4e-114 414.8 340 62.9
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 7.4e-114 414.8 340 62.9
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 1.3e-113 414.1 335 63.0
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.3e-113 414.1 358 59.2
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.6e-113 413.7 356 60.4
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 4.8e-113 412.1 341 63.0
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 4.8e-113 412.1 279 71.3
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.1e-112 411.0 339 61.9
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 4.0e-112 409.1 386 57.3
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 6.9e-112 408.3 347 60.5
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.9e-112 408.3 355 58.6
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.2e-111 407.5 355 58.6
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.2e-111 407.5 351 60.4
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.5e-111 407.1 355 58.6
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.5e-111 407.1 355 58.6
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 1.5e-111 407.1 282 70.6
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 2.6e-111 406.4 279 70.6
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 2.6e-111 406.4 279 70.6
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 3.4e-111 406.0 340 61.2
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.4e-111 406.0 355 58.3
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 4.5e-111 405.6 315 65.7
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.6e-111 404.8 355 58.0
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 1.1e-109 401.0 398 52.0
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 2.1e-108 396.7 337 59.3
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 1.3e-107 394.0 356 57.6
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.3e-107 394.0 353 60.1
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 8.7e-107 391.3 358 57.0
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.1e-105 386.7 345 57.1
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 8.2e-105 384.8 347 56.2
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 2.0e-103 380.2 344 57.3
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.6e-100 370.5 353 55.2
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 2.7e-100 369.8 344 56.7
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.9e-98 363.6 327 59.0
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 6.3e-97 358.6 358 53.6
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 5.3e-96 355.5 381 49.1
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 4.5e-95 352.4 310 57.4
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 2.7e-92 343.2 315 59.4
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 3.3e-90 336.3 280 61.4
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 4.3e-90 335.9 334 53.0
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 9.1e-88 328.2 278 61.2
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 3.4e-87 326.2 297 55.2
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 1.0e-86 324.7 395 49.1
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 1.1e-85 321.2 290 55.5
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 1.4e-85 320.9 335 52.8
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 4.4e-82 309.3 332 52.1
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 7.2e-77 292.0 312 51.0
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.0e-75 288.1 346 47.7
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 9.7e-74 281.6 191 71.2
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 1.7e-73 280.8 307 47.6
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 4.5e-71 272.7 191 70.2
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 3.6e-68 263.1 222 61.7
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.0e-67 261.5 274 52.2
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.8e-65 253.4 366 42.9
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 5.9e-63 245.7 281 49.1
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 3.8e-62 243.0 362 40.9
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 8.3e-57 225.3 225 52.0
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 5.4e-48 196.1 280 41.4
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.4e-42 176.8 316 38.6
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 5.8e-42 176.0 181 50.8
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 7.5e-42 175.6 317 34.7
Actinidia38606 Actinidia chinensis HOM05D003161 ORTHO05D005173 8.0e-36 155.6 148 56.1
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.3e-27 127.5 110 60.0
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 5.2e-27 126.3 97 62.9
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 6.0e-23 112.8 78 66.7
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 7.8e-23 112.5 100 58.0
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 5.2e-19 99.8 115 49.6
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 6.9e-11 72.8 173 32.4
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 1.2e-07 62.0 39 71.8


User provided reference genes

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