Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 0.0e+00 1198.0 609 100.0
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 0.0e+00 1179.5 609 98.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 0.0e+00 1129.4 609 94.6
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 0.0e+00 1126.7 609 94.6
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.5e-224 781.9 630 65.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.1e-217 760.4 609 66.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 7.0e-217 757.7 617 65.5
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.7e-215 753.1 626 64.5
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.5e-214 750.0 637 64.1
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.7e-213 745.0 628 64.5
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-211 739.6 631 64.2
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.7e-210 736.5 631 63.7
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.7e-210 735.3 631 63.5
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 6.3e-210 734.6 627 63.2
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.1e-209 733.8 645 62.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.4e-209 733.4 632 63.1
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-208 729.6 628 63.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.3e-207 726.9 632 62.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.7e-207 726.5 630 62.5
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.2e-206 721.8 629 62.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 5.5e-206 721.5 606 63.2
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.7e-205 718.4 606 62.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.4e-204 716.8 629 60.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.5e-203 713.4 628 61.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 6.3e-202 708.0 619 62.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.3e-202 707.6 627 60.3
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.1e-201 707.2 624 61.9
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.1e-201 707.2 644 59.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.1e-201 705.7 622 60.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 5.4e-201 704.9 622 60.1
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 7.0e-201 704.5 601 63.6
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.2e-201 704.1 622 59.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.2e-200 703.7 622 61.9
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.6e-200 703.4 622 60.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.6e-200 703.4 639 61.3
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.6e-200 703.4 630 60.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 4.5e-200 701.8 619 62.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.0e-199 700.7 608 61.2
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.9e-199 699.1 593 62.6
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.8e-199 698.7 644 59.3
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 5.0e-199 698.4 643 60.8
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.1e-197 691.4 626 60.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 8.0e-197 691.0 630 59.8
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 4.0e-196 688.7 606 60.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 8.9e-196 687.6 600 61.8
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.5e-195 686.8 622 59.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.0e-195 686.4 637 58.9
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.4e-195 685.6 604 60.8
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 4.4e-195 685.3 615 60.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.7e-195 684.9 622 60.1
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.5e-195 684.5 594 61.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.7e-194 682.2 641 59.0
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.9e-194 681.8 637 59.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.8e-193 679.9 600 62.0
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.6e-192 676.8 602 59.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 4.6e-192 675.2 636 60.7
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 3.0e-191 672.5 635 60.9
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 6.6e-191 671.4 646 57.9
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.1e-190 670.6 633 58.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.1e-190 670.6 603 60.9
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.5e-190 670.2 607 60.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 5.6e-190 668.3 625 56.8
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.1e-189 666.4 599 60.4
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.4e-188 663.7 602 60.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.8e-188 663.3 602 60.1
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.3e-188 662.9 626 57.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 6.8e-188 661.4 617 58.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 8.9e-188 661.0 641 57.4
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 8.9e-188 661.0 633 57.2
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-187 660.6 608 58.4
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-187 660.6 623 58.6
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.5e-187 660.2 631 58.6
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.0e-187 659.8 613 58.4
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 3.4e-187 659.1 624 56.9
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 5.8e-187 658.3 603 58.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.7e-186 656.8 606 58.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.7e-186 656.8 611 56.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.9e-186 656.0 611 57.1
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.9e-186 656.0 611 57.1
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 4.9e-186 655.2 635 57.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 6.4e-186 654.8 633 57.0
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 6.4e-186 654.8 621 58.8
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 8.3e-186 654.4 643 56.8
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-185 653.7 615 57.7
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-184 649.8 600 58.2
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.7e-184 649.4 627 56.6
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.5e-184 649.0 649 56.1
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.6e-184 648.7 600 58.2
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.6e-184 648.7 600 58.2
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.6e-184 648.7 602 59.8
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-183 645.6 598 58.4
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.1e-182 644.0 629 56.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.5e-182 643.7 586 59.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.9e-182 643.3 637 57.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.5e-182 641.0 595 60.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.8e-181 639.4 600 56.2
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 6.2e-181 638.3 601 56.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 8.1e-181 637.9 602 57.1
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 3.1e-180 636.0 602 57.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 4.4e-179 632.1 612 58.0
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-178 630.2 552 59.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.2e-170 603.2 505 62.6
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.3e-167 593.2 651 52.8
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 6.6e-167 591.7 599 53.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.7e-165 585.5 597 53.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 3.0e-159 566.2 562 53.7
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 6.0e-152 542.0 655 47.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.5e-150 536.6 573 51.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.6e-149 533.9 558 54.3
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 4.0e-148 529.3 604 51.5
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-147 527.3 598 50.2
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.6e-147 526.6 505 57.2
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.3e-146 524.2 531 55.9
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.9e-146 522.3 606 49.3
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 4.6e-144 515.8 601 51.2
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.2e-130 470.3 501 52.5
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.8e-130 469.5 482 56.2
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.2e-121 439.5 499 51.9
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 9.4e-121 438.3 506 49.6
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.0e-114 418.3 426 58.2
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.3e-114 417.9 662 41.2
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-107 394.4 408 52.9
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-107 393.3 399 55.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 4.7e-104 382.9 531 46.5
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 9.7e-102 375.2 655 38.6
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.7e-99 367.1 337 58.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.7e-93 347.8 611 38.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.4e-92 344.7 429 48.7
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.0e-90 338.6 266 63.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.5e-83 313.2 366 47.8
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.5e-83 313.2 366 47.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 9.8e-78 295.4 249 61.4
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 4.1e-76 290.0 545 38.5
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 5.2e-71 273.1 244 57.0
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 4.4e-62 243.4 148 74.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.7e-61 240.4 793 29.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 2.7e-59 234.2 203 58.1
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-56 224.9 335 40.6
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.6e-56 224.9 335 40.6
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 5.2e-55 219.9 335 40.0
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.8e-45 187.2 537 29.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 4.3e-41 173.7 152 59.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.6e-40 170.6 561 28.7
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.1e-36 159.1 390 35.6
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 7.9e-35 152.9 228 43.4
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.3e-34 151.4 185 47.0
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 3.0e-34 151.0 520 28.1
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-20 105.9 269 32.0
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.5e-20 104.8 60 78.3
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.5e-17 94.7 97 54.6
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.4e-14 84.3 82 57.3
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.8e-13 80.9 100 51.0
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 7.2e-12 76.6 66 62.1
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 7.4e-09 66.6 40 80.0
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.1e-07 62.8 46 69.6


User provided reference genes

Program Settings