Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5053 Papaver somniferum HOM05D002340 ORTHO05D304675 2.8e-70 268.5 131 100.0
PSO210G4972 Papaver somniferum HOM05D002340 ORTHO05D003624 2.0e-20 102.8 59 76.3
PSO761G0177 Papaver somniferum HOM05D002340 ORTHO05D003624 5.8e-20 101.3 59 76.3
TAR636G0019 Trochodendron aralioides HOM05D002340 ORTHO05D003624 3.5e-17 92.0 55 80.0
CANSAT56G1193 Cannabis sativa HOM05D002340 ORTHO05D003624 2.3e-16 89.4 55 72.7
CANSAT56G1362 Cannabis sativa HOM05D002340 ORTHO05D003624 2.3e-16 89.4 55 72.7
TAR624G0296 Trochodendron aralioides HOM05D002340 ORTHO05D003624 3.0e-16 89.0 55 78.2
TAR626G1290 Trochodendron aralioides HOM05D002340 ORTHO05D003624 3.9e-16 88.6 55 76.4
Eucgr.C03716 Eucalyptus grandis HOM05D002340 ORTHO05D003624 8.7e-16 87.4 57 66.7
Prupe.7G218100 Prunus persica HOM05D002340 ORTHO05D003624 1.1e-15 87.0 55 70.9
BcaC06g32760 Brassica carinata HOM05D002340 ORTHO05D003624 1.5e-15 86.7 68 57.4
MELO3C015422.2 Cucumis melo HOM05D002340 ORTHO05D003624 1.5e-15 86.7 55 69.1
CsaV3_1G039910 Cucumis sativus L. HOM05D002340 ORTHO05D003624 1.5e-15 86.7 55 69.1
Nn6g34608 Nelumbo nucifera HOM05D002340 ORTHO05D003624 1.5e-15 86.7 74 60.8
Aqoxy2G01698 Aquilegia oxysepala HOM05D002340 ORTHO05D003624 1.9e-15 86.3 70 60.0
HPP92_000835 Vanilla planifolia HOM05D002340 ORTHO05D003624 1.9e-15 86.3 58 65.5
MD02G1067300 Malus domestica HOM05D002340 ORTHO05D003624 2.5e-15 85.9 55 67.3
Sp7g24270 Schrenkiella parvula HOM05D002340 ORTHO05D003624 2.5e-15 85.9 55 67.3
PGR102G0228 Punica granatum HOM05D002340 ORTHO05D003624 3.3e-15 85.5 56 62.5
Aqoxy2G02463 Aquilegia oxysepala HOM05D002340 ORTHO05D003624 4.3e-15 85.1 70 58.6
AL2G22960 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 4.3e-15 85.1 55 67.3
AUR62021390 Chenopodium quinoa HOM05D002340 ORTHO05D003624 4.3e-15 85.1 76 55.3
THA.LOC104817738 Tarenaya hassleriana HOM05D002340 ORTHO05D003624 4.3e-15 85.1 55 67.3
Nn6g34972 Nelumbo nucifera HOM05D002340 ORTHO05D003624 5.7e-15 84.7 74 58.1
AL2G24500 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 7.4e-15 84.3 55 65.5
BraA03t14729Z Brassica rapa HOM05D002340 ORTHO05D003624 7.4e-15 84.3 55 67.3
CiPaw.04G155400 Carya illinoinensis HOM05D002340 ORTHO05D003624 7.4e-15 84.3 57 63.2
AUR62010877 Chenopodium quinoa HOM05D002340 ORTHO05D003624 7.4e-15 84.3 76 53.9
MD15G1198200 Malus domestica HOM05D002340 ORTHO05D003624 7.4e-15 84.3 55 67.3
ClCG03G016050 Citrullus lanatus HOM05D002340 ORTHO05D003624 1.3e-14 83.6 55 65.5
Sed0015409 Sechium edule HOM05D002340 ORTHO05D003624 1.3e-14 83.6 55 65.5
A03p56590 Brassica napus HOM05D002340 ORTHO05D003624 1.6e-14 83.2 55 65.5
CARHR233870 Cardamine hirsuta HOM05D002340 ORTHO05D003624 1.6e-14 83.2 55 63.6
THA.LOC104813480 Tarenaya hassleriana HOM05D002340 ORTHO05D003624 1.6e-14 83.2 53 67.9
C07p54790 Brassica napus HOM05D002340 ORTHO05D003624 2.1e-14 82.8 55 65.5
BolC7t45968H Brassica oleracea HOM05D002340 ORTHO05D003624 2.1e-14 82.8 55 65.5
Thhalv10024637m.g Eutrema salsugineum HOM05D002340 ORTHO05D003624 2.1e-14 82.8 55 63.6
Lj2g0021832 Lotus japonicus HOM05D002340 ORTHO05D003624 2.1e-14 82.8 57 64.9
MBI04_g27274_MAGBIO Magnolia biondii HOM05D002340 ORTHO05D003624 2.1e-14 82.8 59 66.1
Potri.002G198500 Populus trichocarpa HOM05D002340 ORTHO05D003624 2.1e-14 82.8 54 66.7
Sed0028067 Sechium edule HOM05D002340 ORTHO05D003624 2.1e-14 82.8 55 65.5
AUR62017694 Chenopodium quinoa HOM05D002340 ORTHO05D003624 2.8e-14 82.4 66 57.6
AL7G26650 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 3.7e-14 82.0 55 61.8
BcaC09g50688 Brassica carinata HOM05D002340 ORTHO05D003624 3.7e-14 82.0 55 63.6
BcaNung02430 Brassica carinata HOM05D002340 ORTHO05D003624 3.7e-14 82.0 55 63.6
A01p17560 Brassica napus HOM05D002340 ORTHO05D003624 3.7e-14 82.0 55 63.6
C01p22130 Brassica napus HOM05D002340 ORTHO05D003624 3.7e-14 82.0 55 63.6
BolC1t02144H Brassica oleracea HOM05D002340 ORTHO05D003624 3.7e-14 82.0 55 63.6
AL3G45140 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 4.8e-14 81.6 55 63.6
AT4G26300 Arabidopsis thaliana HOM05D002340 ORTHO05D003624 4.8e-14 81.6 55 61.8
arahy.Tifrunner.gnm1.ann1.P5D7YP Arachis hypogaea HOM05D002340 ORTHO05D003624 4.8e-14 81.6 68 55.9
EL10Ac8g18367 Beta vulgaris HOM05D002340 ORTHO05D003624 4.8e-14 81.6 57 61.4
Carub.0004s0592 Capsella rubella HOM05D002340 ORTHO05D003624 4.8e-14 81.6 55 63.6
Duzib150G1035 Durio zibethinus HOM05D002340 ORTHO05D003624 4.8e-14 81.6 55 61.8
Migut.C00842 Erythranthe guttata HOM05D002340 ORTHO05D003624 4.8e-14 81.6 78 52.6
MBI04_g07003_MAGBIO Magnolia biondii HOM05D002340 ORTHO05D003624 4.8e-14 81.6 59 64.4
TWI63G0999 Tripterygium wilfordii HOM05D002340 ORTHO05D003624 4.8e-14 81.6 55 67.3
AT1G66530 Arabidopsis thaliana HOM05D002340 ORTHO05D003624 6.3e-14 81.3 68 52.9
Manes.16G107800 Manihot esculenta HOM05D002340 ORTHO05D003624 6.3e-14 81.3 57 63.2
Medtr6g088865 Medicago truncatula HOM05D002340 ORTHO05D003624 6.3e-14 81.3 68 57.4
QL02p040888 Quercus lobata HOM05D002340 ORTHO05D003624 6.3e-14 81.3 57 59.6
Hund26287 Selenicereus undatus HOM05D002340 ORTHO05D003624 6.3e-14 81.3 76 51.3
arahy.Tifrunner.gnm1.ann1.4N8NIC Arachis hypogaea HOM05D002340 ORTHO05D003624 8.2e-14 80.9 68 55.9
arahy.Tifrunner.gnm1.ann1.7UQC80 Arachis hypogaea HOM05D002340 ORTHO05D003624 8.2e-14 80.9 57 61.4
arahy.Tifrunner.gnm1.ann1.V4S00D Arachis hypogaea HOM05D002340 ORTHO05D003624 8.2e-14 80.9 57 61.4
BraA01t01709Z Brassica rapa HOM05D002340 ORTHO05D003624 8.2e-14 80.9 55 61.8
Ciclev10007707m.g Citrus clementina HOM05D002340 ORTHO05D003624 8.2e-14 80.9 55 67.3
Duzib168G1789 Durio zibethinus HOM05D002340 ORTHO05D003624 8.2e-14 80.9 55 61.8
Lsat_1_v5_gn_5_60361 Lactuca sativa HOM05D002340 ORTHO05D003624 8.2e-14 80.9 55 63.6
Zm00001eb282310 Zea mays HOM05D002340 ORTHO05D003624 8.2e-14 80.9 115 41.7
Actinidia17513 Actinidia chinensis HOM05D002340 ORTHO05D003624 1.1e-13 80.5 55 65.5
Aa31LG3G690 Aethionema arabicum HOM05D002340 ORTHO05D003624 1.1e-13 80.5 55 61.8
Manes.03G028000 Manihot esculenta HOM05D002340 ORTHO05D003624 1.1e-13 80.5 55 63.6
Medtr1g106040 Medicago truncatula HOM05D002340 ORTHO05D003624 1.1e-13 80.5 57 63.2
SEGI_11723 Sequoiadendron giganteum HOM05D002340 ORTHO05D003624 1.1e-13 80.5 68 57.4
Sc18g0001570 Simmondsia chinensis HOM05D002340 ORTHO05D003624 1.1e-13 80.5 76 51.3
Thecc.09G098900 Theobroma cacao HOM05D002340 ORTHO05D003624 1.1e-13 80.5 55 61.8
Zm00001eb353940 Zea mays HOM05D002340 ORTHO05D003624 1.1e-13 80.5 55 67.3
Carub.0002s1257 Capsella rubella HOM05D002340 ORTHO05D003624 1.4e-13 80.1 55 61.8
Carub.0007s1465 Capsella rubella HOM05D002340 ORTHO05D003624 1.4e-13 80.1 55 61.8
COL.COLO4_34725 Corchorus olitorius HOM05D002340 ORTHO05D003624 1.4e-13 80.1 68 54.4
HanXRQChr15g0484831 Helianthus annuus HOM05D002340 ORTHO05D003624 1.4e-13 80.1 55 61.8
Lj4A371G17 Lonicera japonica HOM05D002340 ORTHO05D003624 1.4e-13 80.1 57 63.2
Glyma.01G006100 Glycine max HOM05D002340 ORTHO05D003624 1.8e-13 79.7 68 55.9
Gohir.A05G026400 Gossypium hirsutum HOM05D002340 ORTHO05D003624 1.8e-13 79.7 55 60.0
Oeu041057.1 Olea europaea HOM05D002340 ORTHO05D003624 1.8e-13 79.7 57 61.4
TPR.G29186 Trifolium pratense HOM05D002340 ORTHO05D003624 1.8e-13 79.7 57 63.2
Ah.09g230510 Amaranthus hybridus HOM05D002340 ORTHO05D003624 2.4e-13 79.3 57 59.6
CDE05G0481 Ceratophyllum demersum HOM05D002340 ORTHO05D003624 2.4e-13 79.3 70 57.1
ECA240G1136 Erigeron canadensis HOM05D002340 ORTHO05D003624 2.4e-13 79.3 57 63.2
HanXRQChr03g0082941 Helianthus annuus HOM05D002340 ORTHO05D003624 2.4e-13 79.3 55 63.6
Os05g0163000 Oryza sativa ssp. japonica HOM05D002340 ORTHO05D003624 3.1e-13 79.0 55 65.5
Phvul.004G174700 Phaseolus vulgaris HOM05D002340 ORTHO05D003624 3.1e-13 79.0 57 61.4
SalBow7G2393 Salvia bowleyana HOM05D002340 ORTHO05D003624 3.1e-13 79.0 57 61.4
VMungo0464G0065 Vigna mungo HOM05D002340 ORTHO05D003624 3.1e-13 79.0 57 59.6
Gohir.D05G027900 Gossypium hirsutum HOM05D002340 ORTHO05D003624 4.1e-13 78.6 55 60.0
Hma1.2p1_0663F.1_g198380 Hydrangea macrophylla HOM05D002340 ORTHO05D003624 4.1e-13 78.6 55 65.5
Lj2g0007018 Lotus japonicus HOM05D002340 ORTHO05D003624 4.1e-13 78.6 68 52.9
Psat3g015880 Pisum sativum HOM05D002340 ORTHO05D003624 4.1e-13 78.6 57 61.4
unitig_46.g18028 Utricularia gibba HOM05D002340 ORTHO05D003624 4.1e-13 78.6 57 61.4
Atru.chr7.1478 Acer truncatum HOM05D002340 ORTHO05D003624 5.3e-13 78.2 57 64.9
MSTRG.1189 Avicennia marina HOM05D002340 ORTHO05D003624 5.3e-13 78.2 68 51.5
Gohir.A08G243400 Gossypium hirsutum HOM05D002340 ORTHO05D003624 5.3e-13 78.2 53 62.3
VMungo0464G1080 Vigna mungo HOM05D002340 ORTHO05D003624 5.3e-13 78.2 57 59.6
DCAR_024710 Daucus carota HOM05D002340 ORTHO05D003624 6.9e-13 77.8 55 60.0
DCAR_031954 Daucus carota HOM05D002340 ORTHO05D003624 6.9e-13 77.8 55 60.0
Glyma.07G125400 Glycine max HOM05D002340 ORTHO05D003624 6.9e-13 77.8 57 59.6
Gohir.D08G264300 Gossypium hirsutum HOM05D002340 ORTHO05D003624 6.9e-13 77.8 53 62.3
Gorai.004G282200 Gossypium raimondii HOM05D002340 ORTHO05D003624 6.9e-13 77.8 53 62.3
Lalb_Chr14g0371951 Lupinus albus HOM05D002340 ORTHO05D003624 6.9e-13 77.8 57 57.9
Phvul.004G174900 Phaseolus vulgaris HOM05D002340 ORTHO05D003624 6.9e-13 77.8 57 59.6
EL10Ac5g10899 Beta vulgaris HOM05D002340 ORTHO05D003624 9.0e-13 77.4 54 63.0
CAN.G1964.3 Capsicum annuum HOM05D002340 ORTHO05D003624 9.0e-13 77.4 55 61.8
Ca_25566_v3 Cicer arietinum L. HOM05D002340 ORTHO05D003624 9.0e-13 77.4 57 59.6
Dinv42257 Davidia involucrata HOM05D002340 ORTHO05D003624 9.0e-13 77.4 55 63.6
Psat1g050800 Pisum sativum HOM05D002340 ORTHO05D003624 9.0e-13 77.4 68 55.9
Cpa.g.sc78.27 Carica papaya HOM05D002340 ORTHO05D003624 1.2e-12 77.0 53 62.3
Ca_25586_v3 Cicer arietinum L. HOM05D002340 ORTHO05D003624 1.2e-12 77.0 68 55.9
Dinv36722 Davidia involucrata HOM05D002340 ORTHO05D003624 1.2e-12 77.0 55 61.8
Gorai.009G028100 Gossypium raimondii HOM05D002340 ORTHO05D003624 1.2e-12 77.0 55 58.2
SGA_v2.0_scaffold92G28226 Striga asiatica HOM05D002340 ORTHO05D003624 1.2e-12 77.0 68 52.9
TPR.G33535 Trifolium pratense HOM05D002340 ORTHO05D003624 1.2e-12 77.0 68 54.4
MSTRG.25252 Avicennia marina HOM05D002340 ORTHO05D003624 1.5e-12 76.6 55 60.0
HanXRQChr03g0082931 Helianthus annuus HOM05D002340 ORTHO05D003624 1.5e-12 76.6 55 58.2
A08p20810 Brassica napus HOM05D002340 ORTHO05D003624 2.0e-12 76.3 70 51.4
BraA08t34036Z Brassica rapa HOM05D002340 ORTHO05D003624 2.0e-12 76.3 70 51.4
TPR.G1096 Trifolium pratense HOM05D002340 ORTHO05D003624 2.0e-12 76.3 57 57.9
vmacro10846 Vaccinium macrocarpon HOM05D002340 ORTHO05D003624 2.0e-12 76.3 53 64.2
Rhsim05G0038200 Rhododendron simsii HOM05D002340 ORTHO05D003624 2.6e-12 75.9 53 64.2
RcHm_v2.0_Chr2g0092141 Rosa chinensis HOM05D002340 ORTHO05D003624 3.4e-12 75.5 68 54.4
Solyc12g008570.3 Solanum lycopersicum HOM05D002340 ORTHO05D003624 4.5e-12 75.1 55 60.0
Sopen12g003510 Solanum pennellii HOM05D002340 ORTHO05D003624 4.5e-12 75.1 55 60.0
Atru.chr12.1556 Acer truncatum HOM05D002340 ORTHO05D003624 7.6e-12 74.3 78 53.8
Nitab4.5_0003079g0060 Nicotiana tabacum HOM05D002340 ORTHO05D003624 1.0e-11 73.9 55 56.4
BcaC07g38230 Brassica carinata HOM05D002340 ORTHO05D003624 1.3e-11 73.6 70 50.0
C08p09840 Brassica napus HOM05D002340 ORTHO05D003624 1.3e-11 73.6 70 50.0
BolC8t48659H Brassica oleracea HOM05D002340 ORTHO05D003624 1.3e-11 73.6 70 50.0
Glyma.01G006400 Glycine max HOM05D002340 ORTHO05D003624 1.3e-11 73.6 57 56.1
Lalb_Chr23g0270771 Lupinus albus HOM05D002340 ORTHO05D003624 1.3e-11 73.6 57 56.1
ATR0705G107 Amborella trichopoda HOM05D002340 ORTHO05D003624 1.7e-11 73.2 104 43.3
Nitab4.5_0000566g0240 Nicotiana tabacum HOM05D002340 ORTHO05D003624 1.7e-11 73.2 55 54.5
CSS0027203 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D003624 2.2e-11 72.8 55 58.2
CSS0024858 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D003624 2.9e-11 72.4 55 58.2
BcaB03g12499 Brassica carinata HOM05D002340 ORTHO05D003624 5.0e-11 71.6 70 50.0
Os01g0158500 Oryza sativa ssp. japonica HOM05D002340 ORTHO05D003624 8.4e-11 70.9 55 56.4
CARHR101300 Cardamine hirsuta HOM05D002340 ORTHO05D003624 1.4e-10 70.1 68 45.6
Mapoly0066s0109 Marchantia polymorpha HOM05D002340 ORTHO05D003624 1.4e-10 70.1 58 53.4
Medtr4g102240 Medicago truncatula HOM05D002340 ORTHO05D003624 1.4e-10 70.1 57 54.4
Glyma.10G102800 Glycine max HOM05D002340 ORTHO05D003624 1.9e-10 69.7 60 55.0
FvH4_1g06400 Fragaria vesca HOM05D002340 ORTHO05D003624 2.5e-10 69.3 68 48.5
FAN19G1928 Fragaria x ananassa HOM05D002340 ORTHO05D003624 2.5e-10 69.3 68 48.5
FAN26G0661 Fragaria x ananassa HOM05D002340 ORTHO05D003624 2.5e-10 69.3 68 48.5
FAN26G2770 Fragaria x ananassa HOM05D002340 ORTHO05D003624 2.5e-10 69.3 68 48.5
Medtr3g110380 Medicago truncatula HOM05D002340 ORTHO05D003624 2.5e-10 69.3 57 52.6
ECA232G2040 Erigeron canadensis HOM05D002340 ORTHO05D003624 4.2e-10 68.6 59 54.2
FAN28G0482 Fragaria x ananassa HOM05D002340 ORTHO05D003624 4.2e-10 68.6 55 54.5
Peaxi162Scf00944g00011 Petunia axillaris HOM05D002340 ORTHO05D003624 4.2e-10 68.6 58 53.4
Haze_25836 Corylus avellana HOM05D002340 ORTHO05D003624 5.5e-10 68.2 61 55.7
FAN23G3056 Fragaria x ananassa HOM05D002340 ORTHO05D003624 5.5e-10 68.2 85 38.8
AagrBONN_evm.TU.Sc2ySwM_117.1274 Anthoceros agrestis HOM05D002340 ORTHO05D003624 1.2e-09 67.0 56 42.9
Aqoxy5G02239 Aquilegia oxysepala HOM05D002340 ORTHO05D003624 1.2e-09 67.0 50 66.0
Pp3c11_1000 Physcomitrium patens HOM05D002340 ORTHO05D003624 1.2e-09 67.0 69 44.9
Atru.chr10.2308 Acer truncatum HOM05D002340 ORTHO05D003624 1.6e-09 66.6 55 56.4
CBR_g3146 Chara braunii HOM05D002340 ORTHO05D003624 1.6e-09 66.6 76 38.2
vmacro07947 Vaccinium macrocarpon HOM05D002340 ORTHO05D003624 2.1e-09 66.2 74 44.6
AL5G11670 Arabidopsis lyrata HOM05D002340 ORTHO05D080373 4.6e-09 65.1 47 57.4
CANSAT11G1397 Cannabis sativa HOM05D002340 ORTHO05D003624 4.6e-09 65.1 62 54.8
CiPaw.03G223100 Carya illinoinensis HOM05D002340 ORTHO05D003624 4.6e-09 65.1 66 50.0
Cc06_g10610 Coffea canephora HOM05D002340 ORTHO05D003624 4.6e-09 65.1 54 50.0
RcHm_v2.0_Chr3g0454641 Rosa chinensis HOM05D002340 ORTHO05D003624 6.1e-09 64.7 69 46.4
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.3e-08 63.5 61 54.1
TAR626G0928 Trochodendron aralioides HOM05D002340 ORTHO05D003624 2.3e-08 62.8 55 63.6
Atru.chr9.635 Acer truncatum HOM05D002340 ORTHO05D003624 1.1e-07 60.5 43 65.1
SMO367G0891 Selaginella moellendorffii HOM05D002340 ORTHO05D003624 1.5e-07 60.1 76 36.8
Nitab4.5_0004673g0010 Nicotiana tabacum HOM05D002340 ORTHO05D003624 1.9e-07 59.7 49 55.1
CARHR039700 Cardamine hirsuta HOM05D002340 ORTHO05D003624 5.7e-07 58.2 65 44.6
SHI02645 Sapria himalayana HOM05D002340 ORTHO05D003624 2.2e-06 56.2 46 54.3
CDE05G0284 Ceratophyllum demersum HOM05D001866 ORTHO05D001915 6.3e-06 54.7 68 47.1


User provided reference genes

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