Gene: AT4G26300

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G26300
  • Transcript Identifier AT4G26300.1
  • Gene Type Coding gene
  • Location Chr4 : 13308400-13313109 : negative

Gene Family Information

  • ID HOM05D002340
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G26300.1
  • symbol emb1027
  • full_name embryo defective 1027
  • uniprot O23247

Descriptions

  • Description Arginyl-tRNA synthetase, class Ic
  • Computational description embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006420
IBA
IEA
Gene Ontologyarginyl-tRNA aminoacylation1
GO:0006420
IEA
InterProarginyl-tRNA aminoacylation
GO:0006412
IEA
GOA Databasetranslation
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004814
IBA
IEA
Gene Ontologyarginine-tRNA ligase activity1
GO:0004814
IEA
InterProarginine-tRNA ligase activity
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
Gene Ontologymitochondrion3
GO:0005737
ISM
IEA
Gene Ontologycytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma4
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast3 5
GO:0005829
HDA
RCA
Gene Ontologycytosol6 7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008909 DALR anticodon binding
IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
IPR005148 Arginyl tRNA synthetase N-terminal domain
IPR035684 Arginyl-tRNA synthetase, catalytic core domain
IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily
IPR001278 Arginine-tRNA ligase
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
Mapman id Description
17.2.2 Protein biosynthesis.aminoacyl-tRNA synthetase activities.arginine-tRNA ligase