Gene: Sopen12g003510

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g003510
  • Transcript Identifier Sopen12g003510.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 2173818-2184226 : positive

Gene Family Information

  • ID HOM05D002340
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g003510.1

Descriptions

  • Description embryo defective 1027 (emb1027) | FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding | INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy | LOCATED IN: mitochondrion, chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site , DALR anticodon binding , Rossmann-like alpha/beta/alpha sandwich fold , Arginyl-tRNA synthetase, class Ic, core , Arginyl tRNA synthetase, class Ic, N-terminal , Aminoacyl-tRNA synthetase, class 1a, anticodon-binding , Arginyl-tRNA synthetase, class Ic | BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006420
IEA
InterProarginyl-tRNA aminoacylation
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G26300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0005524
IEA
InterProATP binding
GO:0004814
IEA
InterProarginine-tRNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
InterProcytoplasm
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT4G26300
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G26300
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G26300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily
IPR001278 Arginine-tRNA ligase
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR005148 Arginyl tRNA synthetase N-terminal domain
IPR035684 Arginyl-tRNA synthetase, catalytic core domain
IPR008909 DALR anticodon binding
Mapman id Description
17.2.2 Protein biosynthesis.aminoacyl-tRNA synthetase activities.arginine-tRNA ligase