Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.7e-101 372.9 209 100.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 6.0e-27 125.2 211 45.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.9e-17 93.6 211 38.4
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.8e-16 89.7 205 40.0
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 3.7e-16 89.4 201 41.3
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.8e-16 89.0 214 38.3
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.2e-16 88.6 209 39.2
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 6.2e-16 88.6 205 39.0
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.1e-15 87.8 215 38.1
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.4e-15 87.4 204 40.2
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.4e-15 87.4 211 38.4
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.8e-15 87.0 214 38.3
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 3.1e-15 86.3 213 38.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 3.1e-15 86.3 212 39.6
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 4.0e-15 85.9 214 38.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.3e-15 85.5 214 38.8
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.3e-15 85.5 207 37.7
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 6.9e-15 85.1 211 35.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 9.0e-15 84.7 206 38.8
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 9.0e-15 84.7 206 39.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 9.0e-15 84.7 211 35.5
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 9.0e-15 84.7 211 35.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.2e-14 84.3 204 39.2
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.2e-14 84.3 211 36.5
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.2e-14 84.3 208 38.9
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-14 84.0 211 37.9
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.5e-14 84.0 205 37.6
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.0e-14 83.6 211 37.0
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.0e-14 83.6 213 37.1
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.0e-14 83.6 211 37.4
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.6e-14 83.2 215 37.7
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 2.6e-14 83.2 206 38.8
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.6e-14 83.2 211 37.9
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.6e-14 83.2 211 37.9
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.4e-14 82.8 206 39.3
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.4e-14 82.8 211 36.5
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.4e-14 82.8 213 38.0
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 7.6e-14 81.6 211 37.4
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 7.6e-14 81.6 211 37.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 7.6e-14 81.6 216 39.4
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 7.6e-14 81.6 203 37.4
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.0e-13 81.3 215 36.7
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.3e-13 80.9 211 38.9
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.3e-13 80.9 212 39.6
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.2e-13 80.1 211 37.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 2.2e-13 80.1 212 39.2
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.9e-13 79.7 214 36.9
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 2.9e-13 79.7 214 37.9
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 3.8e-13 79.3 211 37.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 3.8e-13 79.3 211 36.5
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 3.8e-13 79.3 209 37.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 3.8e-13 79.3 214 36.9
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 3.8e-13 79.3 211 36.5
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 8.4e-13 78.2 214 38.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.4e-12 77.4 211 34.6
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.9e-12 77.0 208 37.5
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.5e-12 76.6 210 32.4
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 3.2e-12 76.3 205 36.6
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 3.2e-12 76.3 212 35.4
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 4.2e-12 75.9 204 37.3
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 4.2e-12 75.9 206 35.0
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 5.5e-12 75.5 214 38.8
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 5.5e-12 75.5 214 36.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 5.5e-12 75.5 213 37.6
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 7.1e-12 75.1 212 32.1
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 7.1e-12 75.1 211 37.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 7.1e-12 75.1 211 37.9
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 7.1e-12 75.1 204 37.3
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 7.1e-12 75.1 207 37.7
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 7.1e-12 75.1 211 35.5
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 9.3e-12 74.7 205 37.1
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.2e-11 74.3 214 36.4
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.2e-11 74.3 203 37.9
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 2.1e-11 73.6 204 35.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.1e-11 73.6 215 36.7
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.7e-11 73.2 202 37.6
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.7e-11 73.2 202 37.6
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.7e-11 73.2 202 37.6
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 2.7e-11 73.2 207 36.7
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 3.5e-11 72.8 214 36.0
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 4.6e-11 72.4 207 35.7
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 4.6e-11 72.4 207 35.7
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 4.6e-11 72.4 207 36.7
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 6.1e-11 72.0 204 35.3
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.1e-11 72.0 208 38.0
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 7.9e-11 71.6 208 37.0
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.9e-11 71.6 157 35.7
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 7.9e-11 71.6 203 35.5
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 7.9e-11 71.6 211 35.5
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.0e-10 71.2 211 37.0
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.3e-10 70.9 210 36.7
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.3e-10 70.9 207 35.7
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 3.0e-10 69.7 215 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.9e-10 69.3 148 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.9e-10 69.3 148 32.4
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.1e-10 68.9 133 33.1
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.1e-10 68.9 208 36.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 5.1e-10 68.9 207 36.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 5.1e-10 68.9 205 36.6
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 6.7e-10 68.6 212 33.5
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 6.7e-10 68.6 257 30.7
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 8.7e-10 68.2 215 34.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 8.7e-10 68.2 206 35.0
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.1e-09 67.8 202 35.6
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.1e-09 67.8 202 36.6
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-09 67.4 161 37.9
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.5e-09 67.4 202 35.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.5e-09 67.4 180 38.9
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.5e-09 67.4 202 35.6
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.9e-09 67.0 205 36.6
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.5e-09 66.6 152 39.5
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.5e-09 66.6 207 33.3
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 4.3e-09 65.9 200 36.5
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 6.3e-08 62.0 147 34.0
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.3e-08 62.0 128 43.0
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.1e-07 61.2 203 37.4
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.4e-07 60.1 207 32.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 3.1e-07 59.7 278 28.8
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.5e-06 57.4 206 29.6
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.6e-06 56.6 202 35.1
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 7.7e-06 55.1 236 31.8
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 7.7e-06 55.1 91 37.4


User provided reference genes

Program Settings