Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403012723 Solanum tuberosum HOM05D005620 ORTHO05D002193 5.1e-160 567.8 302 100.0
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 1.3e-142 510.0 284 95.1
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 1.5e-140 503.1 284 94.4
CAN.G1237.2 Capsicum annuum HOM05D005620 ORTHO05D002193 1.3e-110 403.7 325 71.4
Peaxi162Scf00130g01016 Petunia axillaris HOM05D005620 ORTHO05D002193 1.0e-96 357.5 293 70.3
Nitab4.5_0000826g0250 Nicotiana tabacum HOM05D005620 ORTHO05D002193 1.2e-87 327.4 219 81.7
Nitab4.5_0001618g0310 Nicotiana tabacum HOM05D005620 ORTHO05D002193 2.0e-87 326.6 274 71.5
Hma1.2p1_0056F.1_g031590 Hydrangea macrophylla HOM05D005620 ORTHO05D002193 2.2e-54 216.9 291 45.7
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 8.4e-54 214.9 248 49.6
Dinv30296 Davidia involucrata HOM05D005620 ORTHO05D002193 1.4e-53 214.2 293 45.7
CAN.G1442.1 Capsicum annuum HOM05D005620 ORTHO05D002193 5.1e-51 205.7 188 62.2
AUR62026123 Chenopodium quinoa HOM05D005620 ORTHO05D002193 1.6e-49 200.7 303 44.6
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 1.8e-48 197.2 288 41.0
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 1.8e-48 197.2 288 41.0
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 2.4e-48 196.8 248 46.0
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 8.9e-48 194.9 287 44.3
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 5.4e-45 185.7 287 39.7
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 1.2e-44 184.5 302 40.4
CiPaw.09G042300 Carya illinoinensis HOM05D005620 ORTHO05D002193 1.6e-44 184.1 296 42.2
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 6.0e-44 182.2 242 43.0
Duzib128G2038 Durio zibethinus HOM05D005620 ORTHO05D002193 7.8e-44 181.8 288 39.6
TAR636G3531 Trochodendron aralioides HOM05D005620 ORTHO05D002193 7.8e-44 181.8 292 40.4
MD12G1086000 Malus domestica HOM05D005620 ORTHO05D002193 1.0e-43 181.4 291 41.9
Cc06_g18370 Coffea canephora HOM05D005620 ORTHO05D002193 2.3e-43 180.3 295 42.7
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 2.3e-43 180.3 242 42.6
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 5.1e-43 179.1 266 44.4
Prupe.7G050000 Prunus persica HOM05D005620 ORTHO05D002193 1.1e-42 177.9 276 41.7
DCAR_019171 Daucus carota HOM05D005620 ORTHO05D002193 7.3e-42 175.3 257 44.4
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 9.6e-42 174.9 300 38.7
Nn7g36440 Nelumbo nucifera HOM05D005620 ORTHO05D002193 1.6e-41 174.1 268 41.0
Migut.K00117 Erythranthe guttata HOM05D005620 ORTHO05D002193 2.8e-41 173.3 285 37.9
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 2.8e-41 173.3 288 38.5
RcHm_v2.0_Chr3g0484531 Rosa chinensis HOM05D005620 ORTHO05D002193 6.2e-41 172.2 251 44.6
FvH4_6g24881 Fragaria vesca HOM05D005620 ORTHO05D002193 8.1e-41 171.8 251 45.0
SGA_v2.0_scaffold94G28513 Striga asiatica HOM05D005620 ORTHO05D002193 8.1e-41 171.8 283 39.2
MBI19_g08310_MAGBIO Magnolia biondii HOM05D005620 ORTHO05D002193 1.1e-40 171.4 229 44.1
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 1.8e-40 170.6 264 42.4
Oeu023137.3 Olea europaea HOM05D005620 ORTHO05D002193 1.8e-40 170.6 216 48.6
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 1.8e-40 170.6 307 39.7
Gohir.D03G074900 Gossypium hirsutum HOM05D005620 ORTHO05D002193 2.4e-40 170.2 288 38.5
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 2.4e-40 170.2 284 37.7
Glyma.02G191100 Glycine max HOM05D005620 ORTHO05D002193 4.0e-40 169.5 302 38.7
Gorai.003G086400 Gossypium raimondii HOM05D005620 ORTHO05D002193 5.3e-40 169.1 290 38.3
arahy.Tifrunner.gnm1.ann1.K8ZQW4 Arachis hypogaea HOM05D005620 ORTHO05D002193 6.9e-40 168.7 297 40.1
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 1.5e-39 167.5 295 38.0
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 2.0e-39 167.2 286 38.8
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 5.8e-39 165.6 285 38.9
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 7.6e-39 165.2 300 37.7
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 1.3e-38 164.5 285 37.2
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 1.7e-38 164.1 284 37.0
vmacro21954 Vaccinium macrocarpon HOM05D005620 ORTHO05D002193 1.7e-38 164.1 300 38.3
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 2.9e-38 163.3 245 39.2
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 8.4e-38 161.8 296 37.5
Ca_25788_v3 Cicer arietinum L. HOM05D005620 ORTHO05D002193 8.4e-38 161.8 305 38.4
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 1.4e-37 161.0 285 37.5
Glyma.10G105800 Glycine max HOM05D005620 ORTHO05D002193 1.4e-37 161.0 297 38.7
Gohir.A02G123602 Gossypium hirsutum HOM05D005620 ORTHO05D002193 1.4e-37 161.0 289 37.4
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 3.2e-37 159.8 288 37.2
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 5.4e-37 159.1 289 39.1
Haze_19751 Corylus avellana HOM05D005620 ORTHO05D002193 5.4e-37 159.1 236 43.2
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 1.6e-36 157.5 302 38.7
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 4.6e-36 156.0 289 39.1
Aa31LG1G23480 Aethionema arabicum HOM05D005620 ORTHO05D002193 6.0e-36 155.6 258 39.5
QL07p005073 Quercus lobata HOM05D005620 ORTHO05D002193 6.0e-36 155.6 235 41.7
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 7.9e-36 155.2 258 39.1
PSO339G1912 Papaver somniferum HOM05D005620 ORTHO05D002193 1.0e-35 154.8 281 38.4
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 1.3e-35 154.5 273 38.8
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 1.3e-35 154.5 259 38.6
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 2.3e-35 153.7 311 34.4
Aqoxy1G00331 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 5.1e-35 152.5 266 42.1
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 3.3e-34 149.8 247 41.7
MSTRG.10802 Avicennia marina HOM05D005620 ORTHO05D002193 4.3e-34 149.4 202 44.1
Eucgr.K01579 Eucalyptus grandis HOM05D005620 ORTHO05D002193 4.3e-34 149.4 292 36.3
ATR0733G075 Amborella trichopoda HOM05D005620 ORTHO05D002193 5.6e-34 149.1 289 37.4
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 5.6e-34 149.1 312 34.9
FAN05G4287 Fragaria x ananassa HOM05D005620 ORTHO05D002193 9.6e-34 148.3 274 39.8
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 1.6e-33 147.5 312 34.9
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 2.1e-33 147.1 276 37.0
AUR62024530 Chenopodium quinoa HOM05D005620 ORTHO05D002193 2.8e-33 146.7 264 40.5
Aqoxy5G03576 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 3.6e-33 146.4 262 40.8
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 3.6e-33 146.4 269 37.2
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 4.8e-33 146.0 147 53.7
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 2.4e-32 143.7 263 37.6
Lj2A390T38 Lonicera japonica HOM05D005620 ORTHO05D002193 4.0e-32 142.9 111 62.2
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 6.9e-32 142.1 272 35.3
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 6.9e-32 142.1 248 36.3
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 1.5e-31 141.0 242 39.7
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 2.6e-31 140.2 272 36.8
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 3.4e-31 139.8 242 38.4
HPP92_016888 Vanilla planifolia HOM05D005620 ORTHO05D002193 3.4e-31 139.8 287 33.8
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 7.6e-31 138.7 175 44.6
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 9.9e-31 138.3 247 41.3
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 2.4e-29 133.7 85 71.8
Hund19124 Selenicereus undatus HOM05D005620 ORTHO05D002193 1.2e-28 131.3 234 36.8
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 1.6e-28 131.0 305 33.8
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 7.9e-28 128.6 225 36.9
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 3.0e-27 126.7 305 32.5
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 3.9e-27 126.3 283 33.9
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 1.5e-26 124.4 153 46.4
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 1.9e-26 124.0 319 33.5
BcaC06g34961 Brassica carinata HOM05D005620 ORTHO05D002193 1.2e-23 114.8 78 62.8
Pp3c14_3710 Physcomitrium patens HOM05D005620 ORTHO05D002193 2.0e-23 114.0 256 34.0
BolC6t36428H Brassica oleracea HOM05D005620 ORTHO05D002193 4.9e-22 109.4 164 39.0
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 6.5e-22 109.0 76 63.2
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 9.3e-21 105.1 284 33.8
SEGI_06428 Sequoiadendron giganteum HOM05D005620 ORTHO05D002193 1.6e-20 104.4 302 28.5
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 3.0e-19 100.1 342 28.7
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 3.9e-19 99.8 76 56.6
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 8.7e-19 98.6 81 56.8
SHI24582 Sapria himalayana HOM05D005620 ORTHO05D002193 5.9e-15 85.9 80 53.8
COL.COLO4_33915 Corchorus olitorius HOM05D005620 ORTHO05D002193 1.4e-13 81.3 67 56.7
CBR_g30450 Chara braunii HOM05D005620 ORTHO05D002193 1.1e-10 71.6 111 42.3
AL4G39920 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 5.7e-10 69.3 285 26.0
BolC6t38904H Brassica oleracea HOM05D005620 ORTHO05D002193 9.7e-10 68.6 49 65.3
BolC7t42658H Brassica oleracea HOM05D005620 ORTHO05D002193 3.7e-09 66.6 53 58.5


User provided reference genes

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