Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1876.7 953 100.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1848.6 955 97.5
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1847.4 955 97.3
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1822.4 955 96.8
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1783.8 955 93.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1763.4 955 92.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1733.8 953 93.1
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1616.3 964 82.5
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1600.1 956 82.9
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1598.2 958 82.6
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1584.7 956 81.6
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1582.8 956 81.5
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 955 82.1
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 948 81.8
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 956 81.0
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1570.4 962 81.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1567.7 963 80.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 958 80.6
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 937 82.3
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1566.2 964 80.8
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 961 81.2
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 956 81.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 961 81.1
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 956 80.5
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 952 81.0
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 952 80.7
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1556.2 964 79.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 956 80.1
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1552.0 962 79.6
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1552.0 962 79.6
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 946 80.4
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 946 80.3
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 935 81.6
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 952 80.4
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 948 80.0
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1544.3 952 79.6
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 961 78.8
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 949 80.1
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 940 80.6
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1540.4 959 79.5
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1538.5 948 79.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1538.1 953 80.2
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 950 80.0
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 957 79.1
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 958 79.6
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 946 79.4
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 957 80.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 953 79.2
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 960 79.6
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 956 79.7
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1527.3 963 78.6
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 963 78.4
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1525.4 961 77.8
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 971 77.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 940 80.5
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 972 78.3
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 968 79.6
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 957 78.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1517.7 960 78.2
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1517.7 972 77.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1514.2 972 78.0
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 951 79.1
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 969 77.8
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 971 77.5
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1505.3 967 77.5
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 971 76.7
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 968 76.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 967 77.1
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 939 78.4
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 954 77.8
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 961 78.3
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1500.0 961 78.0
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 964 77.3
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 944 78.0
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1486.5 970 75.6
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 940 76.8
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 1003 75.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 940 76.8
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 940 77.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 940 77.0
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 943 77.0
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 940 77.1
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 940 76.9
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 940 76.6
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 940 76.6
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 940 76.5
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 953 76.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 943 76.5
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 943 76.4
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 962 75.4
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 953 77.0
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 943 76.4
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1468.4 956 76.3
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 960 76.1
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1467.2 935 76.6
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 972 75.3
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1460.3 961 76.1
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1458.7 956 75.1
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1446.0 969 75.6
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1438.7 949 75.1
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1429.1 953 74.7
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1407.5 955 71.6
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1406.7 946 71.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1377.5 939 73.1
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1369.0 835 81.0
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1352.8 948 72.6
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1320.1 845 77.2
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1317.0 960 68.6
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1315.4 850 76.6
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1196.8 733 80.4
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1188.3 997 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1176.0 961 60.8
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1174.1 961 63.6
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1140.6 707 79.9
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1119.0 1020 55.9
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1087.4 663 81.1
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1077.4 644 82.5
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1077.0 936 59.5
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 2.7e-276 955.7 709 66.7
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 6.0e-223 778.5 767 52.0
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.0e-214 749.6 463 79.0
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.8e-179 634.0 440 71.8
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.0e-129 466.5 303 70.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.8e-110 404.8 1091 27.3
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 3.4e-109 400.6 651 39.2
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 7.9e-82 309.7 202 73.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.6e-66 258.8 207 66.7
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.5e-60 236.9 180 67.8
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.8e-55 221.5 300 44.7
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 2.4e-54 218.4 134 82.8
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.7e-50 204.9 125 79.2
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 8.2e-39 166.8 139 62.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.5e-35 156.0 201 40.8
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.7e-29 135.2 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.7e-15 88.2 80 61.2
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 1.4e-06 59.7 94 42.6
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 3.2e-06 58.5 45 66.7


User provided reference genes

Program Settings