Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 2.9e-224 781.6 390 100.0
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 8.4e-216 753.4 390 96.2
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 3.2e-215 751.5 390 96.4
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 4.2e-199 698.0 389 89.5
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.4e-191 672.9 387 86.8
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.8e-189 666.0 387 85.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 3.0e-157 558.9 384 72.4
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 1.5e-151 540.0 384 70.8
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 8.0e-150 534.3 378 69.8
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 2.9e-147 525.8 374 71.9
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 5.4e-146 521.5 374 70.3
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 2.7e-145 519.2 424 64.6
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 6.0e-145 518.1 380 67.6
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 7.8e-145 517.7 378 70.6
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 1.1e-143 513.8 394 67.0
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 7.3e-143 511.1 381 70.1
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 8.1e-142 507.7 374 68.2
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.1e-141 507.3 379 66.8
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 1.1e-141 507.3 379 68.1
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.8e-141 506.5 374 68.2
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 5.2e-141 505.0 368 69.3
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 6.8e-141 504.6 370 68.6
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.2e-140 503.8 375 69.1
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.6e-140 502.7 374 67.9
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 3.4e-140 502.3 359 69.6
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 5.8e-140 501.5 388 68.3
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 5.8e-140 501.5 400 66.0
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 7.5e-140 501.1 368 67.7
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 1.3e-139 500.4 373 67.3
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.7e-139 500.0 387 68.5
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 2.2e-139 499.6 378 67.5
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 2.9e-139 499.2 377 66.8
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.9e-139 499.2 374 67.1
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.9e-139 499.2 359 69.4
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 3.7e-139 498.8 378 68.3
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 8.3e-139 497.7 371 69.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.1e-138 497.3 346 72.5
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 3.5e-137 492.3 372 67.7
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 7.8e-137 491.1 394 64.7
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.6e-136 488.0 410 62.2
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 8.6e-136 487.6 383 65.3
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 1.9e-135 486.5 376 66.8
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 7.3e-135 484.6 381 64.0
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 3.6e-134 482.3 369 67.2
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 8.9e-133 477.6 374 65.8
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.0e-132 476.5 390 63.8
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 3.4e-132 475.7 375 65.1
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 6.4e-131 471.5 357 66.4
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.9e-130 469.9 480 53.3
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 3.2e-130 469.2 374 66.6
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 4.1e-130 468.8 359 68.5
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 2.1e-129 466.5 376 63.6
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 3.5e-129 465.7 380 63.7
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.0e-128 464.2 371 64.4
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.3e-128 463.8 377 63.1
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.3e-128 463.0 362 64.4
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 3.0e-128 462.6 366 63.9
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 3.0e-128 462.6 383 62.1
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 1.1e-127 460.7 388 62.9
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 1.5e-127 460.3 325 69.8
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.9e-127 459.9 325 69.8
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.9e-127 459.9 380 63.4
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 5.6e-127 458.4 377 63.4
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 5.6e-127 458.4 382 62.6
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 7.3e-127 458.0 376 65.2
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 7.3e-127 458.0 385 62.9
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 9.6e-127 457.6 373 62.7
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 1.2e-126 457.2 438 57.1
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.1e-126 456.4 374 63.9
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 2.8e-126 456.1 383 62.4
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 8.1e-126 454.5 370 65.1
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 1.1e-125 454.1 325 69.5
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 2.4e-125 453.0 365 64.4
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.2e-125 451.8 382 61.8
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 7.6e-124 448.0 362 64.4
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 2.9e-123 446.0 407 58.2
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 2.9e-123 446.0 371 60.9
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 2.9e-123 446.0 374 63.1
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.4e-122 443.7 361 62.0
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.9e-122 443.4 360 64.2
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 5.4e-122 441.8 322 68.0
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 7.1e-122 441.4 372 61.6
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 7.1e-122 441.4 361 61.8
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 7.1e-122 441.4 338 66.0
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 4.6e-121 438.7 350 62.6
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.3e-120 436.4 330 67.3
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 2.3e-120 436.4 367 62.9
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 2.8e-118 429.5 331 63.7
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 4.8e-118 428.7 331 63.1
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 2.6e-116 422.9 369 59.6
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 2.6e-116 422.9 369 59.6
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 1.2e-113 414.1 335 62.1
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.5e-111 407.1 332 62.3
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 7.3e-111 404.8 324 65.4
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 3.9e-104 382.5 324 60.8
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 5.6e-103 378.6 330 58.5
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 5.8e-100 368.6 343 56.0
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 3.2e-98 362.8 381 54.3
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.5e-92 344.0 252 66.3
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 3.4e-92 342.8 276 63.8
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 7.2e-90 335.1 323 53.9
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.9e-87 327.0 309 57.3
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 5.1e-80 302.4 410 49.5
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 5.7e-79 298.9 457 40.3
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.3e-78 295.4 186 73.7
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 5.9e-76 288.9 231 62.8
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.7e-67 260.8 151 78.8
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 2.9e-67 260.0 184 72.8
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 7.5e-63 245.4 197 64.0
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 1.8e-53 214.2 379 39.1
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 3.6e-49 199.9 141 69.5
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 5.6e-34 149.4 79 86.1
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 8.0e-33 145.6 141 58.2
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 1.2e-20 105.1 207 32.4
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 7.8e-20 102.4 333 26.7
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.7e-19 101.3 333 25.8
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 4.7e-17 93.2 344 26.7
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 2.3e-16 90.9 381 27.3
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 5.2e-16 89.7 368 25.8
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 2.6e-15 87.4 201 30.3
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 3.4e-15 87.0 195 29.2
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 4.4e-15 86.7 188 30.9
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 7.6e-15 85.9 214 29.0
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 1.3e-14 85.1 198 30.8
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.3e-14 85.1 214 28.0
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.7e-14 84.7 203 29.1
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.7e-14 84.7 217 28.6
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 2.2e-14 84.3 211 28.4
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 2.9e-14 84.0 197 30.5
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 3.8e-14 83.6 200 28.0
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 4.9e-14 83.2 233 28.8
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 6.4e-14 82.8 195 30.3
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 8.4e-14 82.4 195 30.8
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.4e-13 81.6 206 25.7
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.4e-13 81.6 212 31.6
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 1.4e-13 81.6 210 29.0
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.9e-13 81.3 199 27.1
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 1.9e-13 81.3 240 26.2
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 2.4e-13 80.9 199 27.1
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 2.4e-13 80.9 187 31.0
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 2.4e-13 80.9 203 29.1
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 3.2e-13 80.5 386 26.9
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 3.2e-13 80.5 206 25.7
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.2e-13 80.5 176 29.5
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 5.4e-13 79.7 340 26.2
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 5.4e-13 79.7 198 28.8
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 5.4e-13 79.7 198 28.8
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 5.4e-13 79.7 199 27.1
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 7.1e-13 79.3 337 25.5
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 7.1e-13 79.3 184 31.0
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 9.2e-13 79.0 215 27.4
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 9.2e-13 79.0 208 26.4
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.2e-12 78.6 198 28.3
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 2.7e-12 77.4 212 29.2
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 3.5e-12 77.0 205 28.3
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 4.6e-12 76.6 390 25.1
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 4.6e-12 76.6 204 30.9
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 4.6e-12 76.6 198 27.3
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 6.0e-12 76.3 176 29.0
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 6.0e-12 76.3 176 29.0
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 3.9e-11 73.6 390 25.4
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 6.6e-11 72.8 220 27.7
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 6.6e-11 72.8 325 25.5
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 1.1e-10 72.0 185 28.1
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.5e-10 71.6 202 30.2
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 4.3e-10 70.1 51 70.6
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 1.2e-09 68.6 280 25.7
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.6e-09 68.2 177 28.2
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 3.6e-09 67.0 181 28.7
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 6.2e-09 66.2 223 23.3
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 2.0e-07 61.2 407 23.3
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 2.6e-07 60.8 96 32.3
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 2.6e-07 60.8 348 25.3
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 3.4e-07 60.5 320 23.4
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 4.9e-06 56.6 338 24.0
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 4.9e-06 56.6 72 36.1
PRCOL_00002466 Prasinoderma coloniale HOM05D005655 ORTHO05D007386 6.4e-06 56.2 207 28.0


User provided reference genes

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