Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 7.8e-212 740.3 414 100.0
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 9.9e-207 723.4 414 97.6
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.1e-205 717.2 414 91.5
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 2.7e-196 688.7 417 88.2
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.0e-166 590.5 416 78.1
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.9e-165 586.3 414 74.9
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 9.4e-165 583.9 415 80.2
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 7.9e-164 580.9 413 78.2
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 4.5e-159 565.1 413 78.7
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.0e-158 561.6 418 77.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 5.0e-158 561.6 418 74.6
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 8.5e-158 560.8 415 74.0
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 8.5e-158 560.8 420 74.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 7.2e-157 557.8 396 79.8
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 8.0e-156 554.3 414 76.8
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.1e-154 550.4 415 70.8
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 4.4e-154 548.5 421 73.6
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 5.7e-154 548.1 414 70.8
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 5.7e-154 548.1 413 76.3
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.3e-153 547.0 421 74.1
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 8.2e-153 544.3 421 76.5
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.2e-153 544.3 421 71.0
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.1e-152 543.9 422 74.9
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.4e-152 543.5 415 70.8
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.4e-152 542.7 414 72.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 4.1e-152 542.0 418 72.5
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.2e-151 540.4 412 76.2
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.6e-151 540.0 414 75.6
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 2.7e-151 539.3 416 76.9
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.7e-151 537.7 421 73.6
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 7.7e-151 537.7 415 73.3
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 7.7e-151 537.7 414 71.5
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.0e-150 537.3 417 74.3
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.0e-150 537.3 415 72.0
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.2e-150 536.2 421 69.6
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.8e-150 535.4 415 71.8
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 3.8e-150 535.4 416 74.5
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.0e-150 535.0 415 71.8
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 1.1e-149 533.9 416 72.1
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.5e-149 532.7 431 67.7
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 3.2e-149 532.3 414 70.8
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.6e-148 530.0 416 72.8
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.1e-148 529.6 415 71.6
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.4e-147 526.9 413 75.3
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 6.8e-147 524.6 415 72.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 8.8e-147 524.2 418 74.4
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.2e-146 523.9 413 70.7
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 3.4e-146 522.3 416 70.7
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.7e-146 521.5 419 68.5
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.3e-145 520.4 397 74.1
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 3.7e-145 518.8 414 69.3
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.1e-144 517.3 423 68.6
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.8e-144 516.5 417 71.5
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.4e-144 516.2 423 68.3
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.1e-144 515.8 423 68.6
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 3.1e-144 515.8 415 70.6
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 2.0e-143 513.1 395 75.7
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.0e-143 513.1 417 73.9
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 3.5e-143 512.3 421 71.3
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.6e-140 503.4 417 67.4
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 6.1e-140 501.5 433 65.4
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 9.8e-138 494.2 422 65.6
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.7e-137 493.4 422 66.1
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.2e-137 493.0 418 66.3
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 4.9e-137 491.9 418 68.2
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.9e-137 491.9 433 65.4
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.4e-136 489.6 418 70.6
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.2e-135 487.3 423 69.5
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 4.5e-135 485.3 418 66.0
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 7.7e-135 484.6 417 65.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.0e-134 484.2 427 69.1
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.7e-134 483.4 422 67.1
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 2.3e-134 483.0 423 68.8
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.5e-133 480.3 411 69.1
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.9e-133 479.9 336 76.2
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 3.3e-133 479.2 414 69.8
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.3e-133 478.8 436 65.1
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 7.3e-133 478.0 329 77.2
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.2e-132 477.2 414 69.3
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.0e-131 472.6 394 69.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 4.0e-131 472.2 415 63.6
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 8.9e-131 471.1 438 60.0
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.5e-130 470.3 412 67.7
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.4e-130 468.8 325 77.5
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 7.5e-130 468.0 322 77.3
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 8.3e-129 464.5 411 63.5
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.4e-128 463.0 415 61.9
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 5.4e-128 461.8 415 62.2
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.2e-127 460.7 419 60.4
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.0e-127 459.9 414 61.6
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.3e-126 456.4 329 74.5
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 2.3e-126 456.4 329 74.5
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 3.0e-126 456.1 348 71.6
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 8.6e-126 454.5 322 75.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 7.3e-125 451.4 348 71.0
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.2e-124 450.7 418 59.8
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 6.2e-124 448.4 394 62.4
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.1e-123 446.0 448 58.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.5e-122 443.7 396 62.4
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.1e-120 437.6 419 60.6
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.4e-115 420.6 400 66.2
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 4.0e-115 419.1 399 64.7
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.0e-114 416.8 413 60.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.1e-107 394.4 416 58.9
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.6e-106 389.8 376 57.7
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 8.4e-105 384.8 218 89.4
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.5e-103 379.4 377 56.2
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 4.0e-99 365.9 281 78.3
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.2e-98 364.4 415 52.3
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.9e-97 359.8 434 52.8
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.5e-93 346.7 447 51.0
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.2e-90 337.8 443 49.9
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.4e-90 336.3 290 64.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.6e-87 325.9 371 57.1
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 2.8e-84 316.6 340 56.8
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 8.4e-81 305.1 352 54.0
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 9.6e-77 291.6 168 85.7
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 3.1e-75 286.6 153 92.2
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.9e-72 277.3 339 54.9
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.0e-70 271.6 283 57.2
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-60 238.0 137 88.3
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.4e-59 233.8 156 74.4
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 1.8e-54 217.6 114 93.0
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.8e-52 210.3 167 65.3
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 8.5e-49 198.7 116 85.3
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.1e-47 194.1 263 50.2
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-46 191.4 120 80.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-43 181.8 159 60.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.5e-40 170.6 284 44.0
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.0e-38 165.2 156 50.6
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 5.9e-34 149.4 420 32.9
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 6.5e-33 146.0 184 51.1
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.4e-27 128.3 116 59.5
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.5e-26 123.2 64 90.6
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.0e-25 122.1 161 50.9
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-25 121.7 64 89.1
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.3e-25 121.7 64 89.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 3.8e-25 120.2 72 81.9
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.5e-25 119.4 64 87.5
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.2e-24 116.7 97 63.9
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 5.5e-24 116.3 156 55.1
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 2.1e-23 114.4 68 82.4
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.4e-22 111.7 141 51.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.4e-22 111.7 68 80.9
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.8e-22 111.3 66 81.8
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 9.2e-19 99.0 108 52.8
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 5.0e-09 66.6 74 48.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 5.0e-09 66.6 74 48.6
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.2e-07 62.0 91 59.3


User provided reference genes

Program Settings