Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 2134.4 1049 100.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 2090.8 1046 98.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 2088.9 1046 98.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1932.1 1046 90.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1929.8 1046 90.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1929.5 1044 90.4
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1650.6 1051 77.6
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1607.8 1051 75.5
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1594.3 1051 75.2
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1585.5 1052 73.7
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1582.0 1051 74.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1582.0 1050 73.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1577.8 1051 72.3
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1574.3 1153 68.7
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1557.0 1048 73.3
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1534.2 1048 70.8
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1530.8 1050 71.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1528.8 1049 70.9
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1524.2 1135 66.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1519.6 1051 71.1
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1513.8 1049 70.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1513.0 1049 71.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1513.0 1050 70.3
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1508.8 1050 70.5
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1505.3 1051 70.1
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1501.5 1050 70.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1496.1 1051 69.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1493.8 1051 69.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1493.8 1051 69.4
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1493.4 1050 69.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1490.7 1049 70.4
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1488.8 1048 68.1
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1486.5 1048 68.2
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1485.7 1049 69.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1483.4 1051 70.1
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1481.8 1049 67.9
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1477.2 1059 68.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1474.9 1049 67.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1474.1 1050 68.4
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1473.0 1048 68.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1471.4 1048 68.6
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1471.4 1051 67.6
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1469.5 1048 68.3
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1469.1 1049 68.5
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1468.0 1040 68.7
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1467.6 1049 66.9
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1457.6 1049 68.1
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1455.7 1051 67.3
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1455.3 1050 67.0
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1450.6 1051 67.0
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1448.7 1049 67.9
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1444.9 1048 66.3
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1439.9 1048 65.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1437.2 1048 66.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1436.8 1049 66.3
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1434.9 1007 68.7
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1432.5 1052 65.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1432.5 1041 66.5
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1429.1 1049 65.4
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1429.1 1037 66.2
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1426.0 1048 65.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1419.8 1051 66.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1418.7 1052 65.4
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1414.8 1053 65.9
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1407.5 1054 65.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1398.3 1129 61.1
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1385.2 1049 65.6
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1377.1 1049 64.7
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1374.8 1046 64.1
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1373.6 1046 64.3
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1371.3 1049 64.5
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1368.2 1004 66.8
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1364.0 1048 64.1
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1363.2 1046 63.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1362.8 1048 64.1
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1362.8 1048 64.1
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1359.0 1049 64.0
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1357.4 1046 63.6
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1347.8 1052 62.2
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1345.9 1052 62.1
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1342.4 1046 63.0
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1341.6 1050 63.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1336.2 1047 62.4
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1335.1 1066 61.9
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1332.4 1046 64.1
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1325.5 1046 62.5
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1308.5 1007 64.7
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1297.0 957 66.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1261.1 836 73.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1252.3 1046 59.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1186.4 943 62.9
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1181.4 1055 55.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1161.4 1048 55.3
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1152.9 882 62.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1145.2 804 70.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1145.2 782 71.2
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1141.7 834 67.6
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1133.6 1048 54.9
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1123.2 952 60.0
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1113.6 838 64.7
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1109.0 947 60.2
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1075.5 1048 52.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.1e-306 1053.9 947 58.1
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 3.1e-289 998.8 1047 52.1
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 7.9e-277 957.6 1050 51.2
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.7e-276 954.5 692 66.8
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 4.6e-269 931.8 1075 48.6
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.2e-263 912.9 1089 46.0
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 1.1e-262 910.6 1089 47.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 6.3e-258 894.8 1047 46.6
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 2.1e-253 879.8 943 48.6
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.1e-249 867.5 1078 46.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 4.0e-244 849.0 534 76.8
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 1.5e-243 847.0 578 72.0
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 7.0e-225 785.0 534 72.8
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.2e-212 742.3 506 70.9
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.6e-208 730.7 547 64.9
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.9e-207 726.1 501 69.9
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.6e-199 698.7 614 55.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 6.2e-189 665.6 1225 34.6
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.4e-142 509.2 395 63.5
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.5e-97 362.1 217 82.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.5e-83 314.3 1232 25.4
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.4e-79 301.6 1093 25.6
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 5.8e-54 217.2 149 73.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.2e-52 211.5 141 75.2
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.9e-49 202.2 248 48.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.8e-48 198.4 135 73.3
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.6e-35 156.0 93 80.6
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 3.9e-26 124.8 78 71.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 8.3e-16 90.5 46 91.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 5.5e-12 77.8 50 72.0
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 5.5e-12 77.8 58 58.6
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 7.2e-12 77.4 67 50.7
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.6e-11 75.1 143 33.6
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.8e-10 72.8 169 28.4
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 4.0e-10 71.6 44 77.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 8.8e-10 70.5 95 41.1
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 4.4e-09 68.2 156 28.8
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.3e-08 66.6 176 31.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 6.3e-08 64.3 189 31.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 8.3e-08 63.9 198 30.8
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 8.3e-08 63.9 82 43.9
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.4e-07 62.4 242 27.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 9.1e-07 60.5 94 39.4
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.6e-06 59.7 152 30.3
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.9e-06 57.8 135 29.6
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 7.7e-06 57.4 106 26.4


User provided reference genes

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