Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012781 Solanum tuberosum HOM05D004522 ORTHO05D005887 0.0e+00 1754.6 890 100.0
Sopen02g026540 Solanum pennellii HOM05D004522 ORTHO05D005887 0.0e+00 1455.3 1024 77.5
Solyc02g081910.2 Solanum lycopersicum HOM05D004522 ORTHO05D005887 0.0e+00 1454.5 1024 77.4
Nitab4.5_0000844g0320 Nicotiana tabacum HOM05D004522 ORTHO05D005887 0.0e+00 1338.2 1024 71.9
CAN.G809.41 Capsicum annuum HOM05D004522 ORTHO05D005887 0.0e+00 1309.7 1023 71.8
Peaxi162Scf00036g01311 Petunia axillaris HOM05D004522 ORTHO05D005887 0.0e+00 1270.4 1029 68.4
Nitab4.5_0011308g0020 Nicotiana tabacum HOM05D004522 ORTHO05D005887 0.0e+00 1213.4 959 70.1
Dinv38803 Davidia involucrata HOM05D004522 ORTHO05D005887 2.2e-243 846.3 1063 50.0
Dinv37488 Davidia involucrata HOM05D004522 ORTHO05D005887 9.2e-242 840.9 1070 49.6
CSS0030659 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 8.6e-232 807.7 1045 49.1
Oeu005158.2 Olea europaea HOM05D004522 ORTHO05D005887 1.5e-228 797.0 1030 48.4
Hma1.2p1_0534F.1_g173690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 5.8e-228 795.0 1046 48.5
Hma1.2p1_1265F.1_g271353 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 5.8e-228 795.0 1046 48.5
Cc09_g04950 Coffea canephora HOM05D004522 ORTHO05D005887 1.2e-225 787.3 1036 48.1
Migut.C00355 Erythranthe guttata HOM05D004522 ORTHO05D005887 2.7e-225 786.2 1032 48.0
Hma1.2p1_0495F.1_g165690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 7.8e-225 784.6 1025 48.4
Actinidia21721 Actinidia chinensis HOM05D004522 ORTHO05D005887 1.0e-224 784.3 1034 48.3
CiPaw.07G210600 Carya illinoinensis HOM05D004522 ORTHO05D005887 2.4e-218 763.1 971 48.7
QL12p025652 Quercus lobata HOM05D004522 ORTHO05D005887 4.1e-218 762.3 961 48.5
FvH4_2g36580 Fragaria vesca HOM05D004522 ORTHO05D005887 3.5e-217 759.2 960 49.4
MD08G1125900 Malus domestica HOM05D004522 ORTHO05D005887 6.0e-217 758.4 1025 47.3
SGA_v2.0_scaffold62G21366 Striga asiatica HOM05D004522 ORTHO05D005887 1.1e-215 754.2 1010 46.8
RhsimUnG0118700 Rhododendron simsii HOM05D004522 ORTHO05D005887 5.6e-215 751.9 1035 46.2
CANSAT25G3238 Cannabis sativa HOM05D004522 ORTHO05D005887 2.8e-214 749.6 963 49.2
DCAR_006332 Daucus carota HOM05D004522 ORTHO05D005887 3.6e-214 749.2 981 48.2
vmacro20064 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 1.8e-213 746.9 974 48.2
Prupe.1G457500 Prunus persica HOM05D004522 ORTHO05D005887 2.3e-213 746.5 992 48.1
SalBow1G6309 Salvia bowleyana HOM05D004522 ORTHO05D005887 8.9e-213 744.6 709 56.7
FAN20G0828 Fragaria x ananassa HOM05D004522 ORTHO05D005887 4.4e-212 742.3 920 49.3
Cfa013296 Carpinus fangiana HOM05D004522 ORTHO05D005887 1.7e-211 740.3 909 49.9
Thecc.09G000400 Theobroma cacao HOM05D004522 ORTHO05D005887 1.9e-210 736.9 822 52.2
HanXRQChr16g0521121 Helianthus annuus HOM05D004522 ORTHO05D005887 3.2e-210 736.1 704 56.5
ECA234G1339 Erigeron canadensis HOM05D004522 ORTHO05D005887 7.1e-210 734.9 941 47.8
vmacro18846 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 7.1e-210 734.9 1035 45.0
Nn4g23566 Nelumbo nucifera HOM05D004522 ORTHO05D005887 7.8e-209 731.5 967 48.3
Sc10g0004210 Simmondsia chinensis HOM05D004522 ORTHO05D005887 3.9e-208 729.2 977 46.8
Eucgr.C02139 Eucalyptus grandis HOM05D004522 ORTHO05D005887 5.1e-208 728.8 924 47.7
Lalb_Chr22g0361201 Lupinus albus HOM05D004522 ORTHO05D005887 5.1e-208 728.8 953 49.1
RcHm_v2.0_Chr6g0305241 Rosa chinensis HOM05D004522 ORTHO05D005887 6.6e-208 728.4 700 57.7
Rhsim08G0228200 Rhododendron simsii HOM05D004522 ORTHO05D005887 8.6e-208 728.0 1016 45.7
Gohir.D06G110400 Gossypium hirsutum HOM05D004522 ORTHO05D005887 1.5e-207 727.2 852 50.7
Gorai.010G125500 Gossypium raimondii HOM05D004522 ORTHO05D005887 1.5e-207 727.2 844 51.2
Gohir.A06G108300 Gossypium hirsutum HOM05D004522 ORTHO05D005887 1.9e-207 726.9 859 50.3
TWI63G0055 Tripterygium wilfordii HOM05D004522 ORTHO05D005887 1.9e-207 726.9 954 47.7
Manes.03G000450 Manihot esculenta HOM05D004522 ORTHO05D005887 7.3e-207 724.9 952 48.3
MD15G1105700 Malus domestica HOM05D004522 ORTHO05D005887 9.6e-207 724.5 988 46.0
THA.LOC104819919 Tarenaya hassleriana HOM05D004522 ORTHO05D005887 3.6e-206 722.6 709 56.3
AUR62044451 Chenopodium quinoa HOM05D004522 ORTHO05D005887 1.8e-205 720.3 1060 44.1
COL.COLO4_18648 Corchorus olitorius HOM05D004522 ORTHO05D005887 1.2e-204 717.6 821 52.0
Potri.006G279700 Populus trichocarpa HOM05D004522 ORTHO05D005887 2.6e-204 716.5 877 49.0
Lj8C583T4 Lonicera japonica HOM05D004522 ORTHO05D005887 7.6e-204 714.9 1094 44.0
Lj5g0011494 Lotus japonicus HOM05D004522 ORTHO05D005887 2.2e-203 713.4 767 52.9
Ciclev10007345m.g Citrus clementina HOM05D004522 ORTHO05D005887 2.9e-203 713.0 935 47.8
Atru.chr7.2700 Acer truncatum HOM05D004522 ORTHO05D005887 6.4e-203 711.8 946 47.3
Sabra06G0216700 Salix brachista HOM05D004522 ORTHO05D005887 1.4e-202 710.7 718 55.7
Glyma.14G137100 Glycine max HOM05D004522 ORTHO05D005887 2.4e-202 709.9 726 54.4
Phvul.002G181900 Phaseolus vulgaris HOM05D004522 ORTHO05D005887 7.1e-202 708.4 820 50.5
Hund03258 Selenicereus undatus HOM05D004522 ORTHO05D005887 7.1e-202 708.4 1028 44.3
AUR62020658 Chenopodium quinoa HOM05D004522 ORTHO05D005887 3.5e-201 706.1 1055 43.1
BraA03t15100Z Brassica rapa HOM05D004522 ORTHO05D005887 1.0e-200 704.5 815 49.8
EL10Ac2g03676 Beta vulgaris HOM05D004522 ORTHO05D005887 2.3e-200 703.4 819 50.4
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 8.7e-200 701.4 917 47.1
unitig_60.g25825 Utricularia gibba HOM05D004522 ORTHO05D005887 1.5e-199 700.7 814 50.5
A01p07030 Brassica napus HOM05D004522 ORTHO05D005887 2.1e-198 696.8 738 52.8
arahy.Tifrunner.gnm1.ann1.696W46 Arachis hypogaea HOM05D004522 ORTHO05D005887 3.6e-198 696.0 723 53.7
BraA01t00655Z Brassica rapa HOM05D004522 ORTHO05D005887 6.2e-198 695.3 866 48.7
Sed0013871 Sechium edule HOM05D004522 ORTHO05D005887 4.0e-197 692.6 936 47.0
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 1.2e-196 691.0 815 49.1
CARHR239110 Cardamine hirsuta HOM05D004522 ORTHO05D005887 1.2e-196 691.0 919 46.6
Ca_01520_v3 Cicer arietinum L. HOM05D004522 ORTHO05D005887 1.5e-196 690.6 860 48.5
ClCG05G026380 Citrullus lanatus HOM05D004522 ORTHO05D005887 1.5e-196 690.6 997 45.3
Aqoxy3G03771 Aquilegia oxysepala HOM05D004522 ORTHO05D005887 2.0e-196 690.3 861 49.2
Sp7g29090 Schrenkiella parvula HOM05D004522 ORTHO05D005887 2.0e-196 690.3 947 45.9
Sed0008341 Sechium edule HOM05D004522 ORTHO05D005887 2.0e-196 690.3 1000 44.5
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 9.9e-196 688.0 870 47.4
Carub.0007s0933 Capsella rubella HOM05D004522 ORTHO05D005887 1.7e-195 687.2 893 46.7
FAN27G1482 Fragaria x ananassa HOM05D004522 ORTHO05D005887 2.2e-195 686.8 888 48.9
AT4G31210 Arabidopsis thaliana HOM05D004522 ORTHO05D005887 3.8e-195 686.0 887 46.8
arahy.Tifrunner.gnm1.ann1.IIX4FM Arachis hypogaea HOM05D004522 ORTHO05D005887 6.4e-195 685.3 713 52.7
BcaC09g51903 Brassica carinata HOM05D004522 ORTHO05D005887 6.4e-195 685.3 899 46.6
C01p07770 Brassica napus HOM05D004522 ORTHO05D005887 4.2e-194 682.6 899 46.5
Psat6g033360 Pisum sativum HOM05D004522 ORTHO05D005887 4.2e-194 682.6 869 47.8
Ah.14g088390 Amaranthus hybridus HOM05D004522 ORTHO05D005887 7.1e-194 681.8 835 48.7
GSVIVG01035576001 Vitis vinifera HOM05D004522 ORTHO05D005887 2.7e-193 679.9 932 46.0
TAR629G0385 Trochodendron aralioides HOM05D004522 ORTHO05D005887 3.5e-193 679.5 970 44.9
AL7G20870 Arabidopsis lyrata HOM05D004522 ORTHO05D005887 1.8e-192 677.2 947 44.8
BolC1t00764H Brassica oleracea HOM05D004522 ORTHO05D005887 6.7e-192 675.2 926 45.9
Thhalv10024242m.g Eutrema salsugineum HOM05D004522 ORTHO05D005887 8.7e-192 674.9 911 46.0
Aa31LG2G19110 Aethionema arabicum HOM05D004522 ORTHO05D005887 1.1e-191 674.5 954 45.2
Lsat_1_v5_gn_4_39420 Lactuca sativa HOM05D004522 ORTHO05D005887 7.4e-191 671.8 997 44.3
AUR62043895 Chenopodium quinoa HOM05D004522 ORTHO05D005887 1.3e-190 671.0 1020 43.5
MELO3C003609.2 Cucumis melo HOM05D004522 ORTHO05D005887 6.2e-190 668.7 904 45.5
AUR62028071 Chenopodium quinoa HOM05D004522 ORTHO05D005887 8.1e-190 668.3 1031 43.4
TPR.G12110 Trifolium pratense HOM05D004522 ORTHO05D005887 4.0e-189 666.0 865 46.7
Medtr0245s0010 Medicago truncatula HOM05D004522 ORTHO05D005887 3.4e-188 662.9 917 46.1
Aa31LG2G19120 Aethionema arabicum HOM05D004522 ORTHO05D005887 4.5e-188 662.5 1012 42.6
CANSAT54G0998 Cannabis sativa HOM05D004522 ORTHO05D005887 2.1e-185 653.7 940 45.1
Migut.E00600 Erythranthe guttata HOM05D004522 ORTHO05D005887 5.6e-183 645.6 973 43.6
Medtr1g009570 Medicago truncatula HOM05D004522 ORTHO05D005887 3.7e-182 642.9 736 50.0
Medtr1g009315 Medicago truncatula HOM05D004522 ORTHO05D005887 4.8e-182 642.5 917 45.1
BcaNung01535 Brassica carinata HOM05D004522 ORTHO05D005887 3.1e-181 639.8 813 46.5
Psat6g033400 Pisum sativum HOM05D004522 ORTHO05D005887 9.0e-181 638.3 879 45.3
PSO782G1701 Papaver somniferum HOM05D004522 ORTHO05D005887 2.6e-180 636.7 824 47.9
PSO063G2748 Papaver somniferum HOM05D004522 ORTHO05D005887 2.1e-177 627.1 960 43.1
ATR0691G178 Amborella trichopoda HOM05D004522 ORTHO05D005887 3.0e-176 623.2 1053 40.8
CsaV3_3G047220 Cucumis sativus L. HOM05D004522 ORTHO05D005887 1.6e-174 617.5 945 42.6
HPP92_015554 Vanilla planifolia HOM05D004522 ORTHO05D005887 3.1e-173 613.2 883 45.6
Zm00001eb280820 Zea mays HOM05D004522 ORTHO05D005887 4.2e-170 602.8 726 48.6
PSO478G3803 Papaver somniferum HOM05D004522 ORTHO05D005887 6.9e-165 585.5 939 40.9
MBI16_g42310_MAGBIO Magnolia biondii HOM05D004522 ORTHO05D005887 1.8e-160 570.9 884 43.7
Zm00001eb380580 Zea mays HOM05D004522 ORTHO05D005887 1.2e-143 515.0 624 48.1
Os06g0281400 Oryza sativa ssp. japonica HOM05D004522 ORTHO05D005887 2.0e-140 504.2 636 48.3
Actinidia32105 Actinidia chinensis HOM05D004522 ORTHO05D005887 2.7e-137 493.8 390 65.1
Pp3c23_11430 Physcomitrium patens HOM05D004522 ORTHO05D005887 9.8e-135 485.3 726 40.5
Pp3c24_9990 Physcomitrium patens HOM05D004522 ORTHO05D005887 4.1e-133 479.9 723 40.8
Mapoly0025s0095 Marchantia polymorpha HOM05D004522 ORTHO05D005887 6.6e-123 446.0 808 36.3
SMO304G0055 Selaginella moellendorffii HOM05D004522 ORTHO05D005887 8.9e-120 435.6 687 39.9
AagrBONN_evm.TU.Sc2ySwM_228.692 Anthoceros agrestis HOM05D004522 ORTHO05D005887 1.4e-117 428.3 734 38.7
Glyma.17G196500 Glycine max HOM05D004522 ORTHO05D005887 2.9e-102 377.5 402 53.5
CBR_g22953 Chara braunii HOM05D004522 ORTHO05D005887 3.4e-95 354.0 723 33.2
SalBow1G4849 Salvia bowleyana HOM05D004522 ORTHO05D005887 6.4e-94 349.7 648 40.9
VMungo0251G2701 Vigna mungo HOM05D004522 ORTHO05D005887 1.6e-92 345.1 275 63.6
TPR.G39482 Trifolium pratense HOM05D004522 ORTHO05D005887 5.4e-85 320.1 300 56.7
MCO16G139 Micromonas commoda HOM05D004522 ORTHO05D005887 5.6e-82 310.1 804 31.5
CDE02G2996 Ceratophyllum demersum HOM05D004522 ORTHO05D005887 9.9e-79 299.3 276 55.8
Haze_21777 Corylus avellana HOM05D004522 ORTHO05D005887 9.3e-77 292.7 461 44.5
PRCOL_00000349 Prasinoderma coloniale HOM05D004522 ORTHO05D005887 3.0e-75 287.7 756 29.5
VMungo0251G2783 Vigna mungo HOM05D004522 ORTHO05D005887 3.9e-75 287.3 304 53.0
Cpa.g.sc246.5 Carica papaya HOM05D004522 ORTHO05D005887 2.8e-73 281.2 262 59.5
Cre10.g442850 Chlamydomonas reinhardtii HOM05D004522 ORTHO05D005887 7.6e-71 273.1 683 30.0
AUR62013317 Chenopodium quinoa HOM05D004522 ORTHO05D008760 7.1e-69 266.5 175 70.9
Glyma.17G196400 Glycine max HOM05D004522 ORTHO05D005887 1.8e-59 235.3 194 61.9
Actinidia32106 Actinidia chinensis HOM05D004522 ORTHO05D005887 1.6e-52 212.2 511 37.4
Medtr2g066840 Medicago truncatula HOM05D004522 ORTHO05D005887 1.6e-52 212.2 366 38.0
Haze_21779 Corylus avellana HOM05D004522 ORTHO05D005887 5.1e-51 207.2 155 65.2
SHI21133 Sapria himalayana HOM05D004522 ORTHO05D005887 8.2e-49 199.9 320 38.1
Cpa.g.sc246.4 Carica papaya HOM05D004522 ORTHO05D005887 5.3e-48 197.2 178 57.9
Haze_21778 Corylus avellana HOM05D004522 ORTHO05D044826 1.3e-33 149.4 174 50.6
Hma1.2p1_0534F.1_g173700 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 5.0e-30 137.5 408 33.8
Hma1.2p1_1265F.1_g271356 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 5.0e-30 137.5 408 33.8
SEGI_38297 Sequoiadendron giganteum HOM05D004522 ORTHO05D005887 1.0e-22 113.2 145 41.4
Medtr0229s0020 Medicago truncatula HOM05D004522 ORTHO05D005887 3.8e-22 111.3 108 54.6
TPR.G15425 Trifolium pratense HOM05D004522 ORTHO05D005887 1.5e-21 109.4 69 73.9
Nitab4.5_0011308g0040 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.9e-21 109.0 56 89.3
TPR.G20544 Trifolium pratense HOM05D004522 ORTHO05D044826 3.2e-21 108.2 72 70.8
VMungo0251G2915 Vigna mungo HOM05D004522 ORTHO05D005887 7.2e-21 107.1 210 37.6
CSS0024449 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 1.5e-10 72.8 71 53.5
CSS0018701 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 7.5e-10 70.5 69 53.6
CSS0004825 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 4.9e-09 67.8 66 51.5
CSS0037923 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 1.7e-06 59.3 62 46.8


User provided reference genes

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