Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.7e-205 719.2 375 100.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.0e-146 522.3 376 77.1
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 4.7e-139 498.4 297 89.6
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.1e-119 434.1 414 61.4
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.1e-119 431.4 413 62.2
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.1e-115 419.9 330 71.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.0e-113 413.3 414 58.9
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.7e-112 409.1 413 60.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 6.4e-112 408.3 412 58.7
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 9.2e-111 404.4 413 59.8
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.3e-109 400.6 416 57.9
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 3.9e-109 399.1 323 70.0
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 3.3e-108 396.0 411 57.7
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 8.1e-107 391.3 413 56.9
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 3.1e-106 389.4 423 56.7
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.2e-105 387.5 425 54.8
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.5e-105 387.1 410 57.1
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.3e-104 384.0 416 54.6
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.7e-104 383.6 419 54.9
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.7e-104 383.6 410 56.3
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.2e-104 383.3 426 55.4
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.2e-104 383.3 426 55.4
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 3.8e-104 382.5 408 55.1
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 4.9e-104 382.1 412 55.1
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.4e-104 381.7 425 53.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 8.4e-104 381.3 416 54.3
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.4e-103 379.8 425 53.6
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.4e-103 379.8 417 53.7
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.4e-103 379.8 413 55.0
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.2e-103 379.4 425 53.6
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 4.2e-103 379.0 425 54.8
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 4.2e-103 379.0 411 54.5
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 7.1e-103 378.3 319 66.1
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 9.3e-103 377.9 417 54.7
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.6e-102 377.1 421 53.7
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.6e-102 377.1 423 53.2
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.6e-102 377.1 419 53.2
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.1e-102 376.7 406 54.9
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 4.6e-102 375.6 417 53.7
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 7.8e-102 374.8 405 55.1
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 7.8e-102 374.8 402 55.7
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.0e-101 374.4 426 53.8
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 1.7e-101 373.6 418 54.5
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 3.9e-101 372.5 424 53.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 8.7e-101 371.3 424 53.5
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.3e-100 369.4 398 56.5
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 7.3e-100 368.2 424 53.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 7.3e-100 368.2 433 52.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 9.6e-100 367.9 295 69.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.3e-99 367.5 315 64.8
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.6e-99 367.1 418 54.1
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.6e-99 367.1 412 54.4
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.6e-99 367.1 413 53.8
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 2.1e-99 366.7 420 53.3
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.1e-99 366.7 395 55.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.6e-99 365.9 413 53.3
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.6e-99 365.9 416 53.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.1e-98 364.4 416 52.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.8e-98 363.6 412 54.1
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.4e-98 363.2 412 54.6
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 9.0e-98 361.3 411 54.0
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.0e-97 360.1 416 52.2
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 2.6e-97 359.8 420 51.9
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.6e-97 359.8 417 52.0
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 3.4e-97 359.4 333 61.9
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.4e-97 359.4 333 62.5
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.4e-97 359.4 422 52.6
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.8e-97 358.6 319 64.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 7.6e-97 358.2 425 52.2
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.3e-96 357.5 418 52.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-96 356.7 330 62.4
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 2.2e-96 356.7 330 62.4
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.2e-96 356.7 315 64.8
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.9e-96 356.3 420 50.5
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 3.8e-96 355.9 340 60.6
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 4.9e-96 355.5 423 52.5
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.4e-95 353.2 407 53.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 3.2e-95 352.8 340 60.3
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.2e-95 352.8 314 64.3
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 4.2e-95 352.4 422 52.1
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 4.2e-95 352.4 419 52.3
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.7e-94 349.7 384 54.2
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 4.6e-94 349.0 414 52.7
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 4.6e-94 349.0 220 88.2
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 6.0e-94 348.6 408 53.2
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.7e-93 347.1 398 51.3
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 3.9e-93 345.9 313 61.3
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.1e-93 345.5 394 55.1
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.1e-92 344.4 313 61.7
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.5e-92 344.0 410 51.0
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.3e-92 342.4 419 51.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 4.3e-92 342.4 370 53.0
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 9.6e-92 341.3 437 49.0
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 9.6e-92 341.3 396 50.8
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 1.8e-90 337.0 417 51.6
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.8e-90 337.0 436 49.5
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.4e-90 336.7 322 59.9
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.0e-90 335.9 417 50.4
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 4.0e-90 335.9 396 50.5
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 6.9e-90 335.1 413 49.4
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.5e-89 334.0 333 56.8
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.0e-89 333.6 398 49.5
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.4e-89 332.8 416 50.5
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 3.4e-89 332.8 379 51.2
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 9.9e-89 331.3 414 50.7
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-86 323.9 435 49.2
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.5e-84 317.4 347 53.6
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 4.3e-84 315.8 413 47.9
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.6e-83 313.9 348 53.4
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.8e-83 313.2 387 49.9
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.8e-83 313.2 383 49.6
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.5e-76 290.8 264 61.7
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 4.3e-76 289.3 376 47.1
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 2.1e-75 287.0 204 71.1
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.2e-73 281.2 167 84.4
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.7e-72 277.3 272 59.6
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.8e-69 267.3 349 46.4
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.2e-64 250.4 418 41.6
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.5e-60 237.7 128 93.8
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 3.1e-58 229.9 159 73.6
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 3.8e-56 223.0 158 70.3
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.1e-47 194.9 141 71.6
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.2e-46 191.4 281 46.3
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.7e-43 179.9 115 77.4
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.4e-42 177.9 282 42.9
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 8.5e-40 168.7 168 56.5
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 8.0e-38 162.2 114 71.9
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.4e-37 161.4 157 65.6
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 2.2e-32 144.1 157 47.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-31 141.7 161 49.7
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 3.6e-30 136.7 174 55.2
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.2e-27 127.5 261 38.7
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 4.9e-27 126.3 395 32.4
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.9e-19 99.8 98 56.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.9e-16 90.5 72 63.9
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.9e-16 90.1 75 60.0
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.3e-15 87.0 56 71.4
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 3.3e-15 87.0 68 64.7
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.5e-15 85.5 55 70.9
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.5e-15 85.5 56 69.6
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 2.8e-14 84.0 66 63.6
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.6e-14 83.6 55 69.1
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 3.6e-14 83.6 68 63.2
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.3e-11 75.1 142 40.1
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 6.4e-11 72.8 158 34.8
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.6e-09 68.2 109 43.1


User provided reference genes

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