Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 0.0e+00 1285.4 646 100.0
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 0.0e+00 1249.6 655 96.2
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 0.0e+00 1238.0 655 95.3
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 0.0e+00 1144.4 658 87.8
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 0.0e+00 1082.0 660 84.5
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 0.0e+00 1078.5 665 83.0
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 4.4e-294 1014.2 599 85.6
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 4.5e-214 748.4 658 59.3
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 6.5e-213 744.6 658 59.3
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.7e-208 729.9 658 58.7
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 6.9e-207 724.5 596 62.8
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 7.0e-199 698.0 662 55.6
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 3.0e-194 682.6 669 56.2
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 6.7e-194 681.4 664 55.3
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 2.2e-192 676.4 667 54.6
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 4.8e-192 675.2 668 54.9
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 8.2e-192 674.5 669 55.0
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 1.1e-191 674.1 658 55.2
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 4.1e-191 672.2 667 54.7
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 5.3e-191 671.8 669 54.6
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 4.5e-190 668.7 614 56.8
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 4.5e-190 668.7 668 53.3
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 5.9e-190 668.3 656 55.5
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 2.9e-189 666.0 669 54.9
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 1.5e-188 663.7 629 56.0
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 5.5e-188 661.8 668 54.6
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 8.0e-187 657.9 693 53.7
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 4.0e-186 655.6 657 54.5
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 8.8e-186 654.4 654 53.7
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 1.5e-185 653.7 669 53.7
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 4.4e-185 652.1 673 54.1
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 9.8e-185 651.0 607 55.4
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 1.3e-184 650.6 652 54.4
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 4.8e-184 648.7 644 54.5
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 1.2e-182 644.0 598 56.9
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 2.0e-182 643.3 655 53.1
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 2.9e-181 639.4 775 49.4
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.9e-180 636.7 659 54.6
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 4.2e-180 635.6 690 51.0
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 1.6e-179 633.6 652 52.8
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 3.6e-179 632.5 598 56.7
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 6.1e-179 631.7 663 53.1
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 2.0e-177 626.7 666 50.9
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 4.4e-177 625.5 558 58.4
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 3.7e-176 622.5 557 58.2
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 4.1e-175 619.0 676 54.1
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 7.0e-175 618.2 656 51.8
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 1.6e-174 617.1 603 53.9
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 2.0e-174 616.7 600 55.2
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 8.6e-173 611.3 646 51.7
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 8.0e-171 604.7 661 51.7
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 8.0e-171 604.7 665 50.1
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 8.0e-171 604.7 617 52.5
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 1.8e-170 603.6 576 54.2
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 4.0e-170 602.4 623 53.1
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 6.8e-170 601.7 620 52.6
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 1.2e-169 600.9 675 51.0
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 4.4e-169 599.0 589 53.1
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 4.9e-168 595.5 600 52.2
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 8.3e-168 594.7 663 49.2
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 1.4e-167 594.0 617 50.7
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 7.8e-166 588.2 667 49.2
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.0e-165 587.8 602 51.8
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 1.3e-165 587.4 676 47.9
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 1.7e-165 587.0 622 51.8
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 1.9e-164 583.6 611 51.6
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 2.5e-164 583.2 568 54.8
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 3.3e-164 582.8 600 52.2
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 4.3e-164 582.4 665 49.2
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 1.2e-163 580.9 664 48.9
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 1.0e-162 577.8 603 51.1
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 1.4e-162 577.4 595 52.4
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 8.9e-162 574.7 663 49.6
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 1.5e-161 573.9 602 51.2
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 3.4e-161 572.8 663 49.5
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 2.9e-160 569.7 603 50.1
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 1.9e-159 567.0 656 49.4
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 3.5e-158 562.8 600 49.3
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 3.0e-157 559.7 548 54.7
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 4.3e-156 555.8 658 47.0
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 4.7e-155 552.4 600 48.8
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 1.5e-132 477.6 605 44.6
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 4.3e-132 476.1 673 42.5
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.8e-130 470.7 471 54.8
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 2.9e-128 463.4 583 44.1
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 1.7e-120 437.6 547 44.8
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 1.9e-103 380.9 358 55.9
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 4.2e-103 379.8 425 53.2
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.0e-97 360.9 662 33.5
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.7e-88 331.3 575 35.8
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 3.5e-81 307.0 346 48.0
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 6.1e-78 296.2 667 30.0
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 4.5e-73 280.0 309 49.2
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 2.7e-70 270.8 266 50.4
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 1.8e-69 268.1 589 30.1
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 6.8e-69 266.2 529 34.2
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 1.7e-56 224.9 207 53.1
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 5.4e-42 176.8 177 49.7
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 3.1e-37 161.0 173 52.6
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 6.8e-37 159.8 173 52.0
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 3.9e-32 144.1 122 53.3
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 6.0e-25 120.2 226 34.5
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.0e-20 105.1 157 38.2
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 9.9e-20 102.8 205 32.7
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 2.9e-19 101.3 83 51.8
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 1.6e-06 58.9 203 24.6
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 4.8e-06 57.4 200 25.0


User provided reference genes

Program Settings