Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.2e-182 643.3 367 100.0
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 5.7e-73 278.9 388 45.1
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 7.5e-73 278.5 410 45.6
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-72 277.7 405 42.2
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 6.3e-72 275.4 394 46.7
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 1.8e-71 273.9 395 45.8
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 9.1e-71 271.6 412 44.7
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 9.1e-71 271.6 387 44.2
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 5.9e-70 268.9 413 42.9
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.7e-69 267.3 403 44.7
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 2.3e-69 266.9 403 42.2
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 3.8e-69 266.2 417 43.6
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 5.0e-69 265.8 392 45.7
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.1e-68 264.6 383 45.4
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 3.2e-68 263.1 398 41.7
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 3.2e-68 263.1 395 41.8
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.6e-67 260.8 432 39.6
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.4e-66 257.7 404 45.3
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.4e-66 257.7 377 43.5
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.8e-66 257.3 377 43.0
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.3e-66 256.9 390 43.8
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 5.7e-65 252.3 409 43.0
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 5.7e-65 252.3 413 41.6
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 2.8e-64 250.0 405 41.0
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 4.9e-64 249.2 395 40.8
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 6.3e-64 248.8 455 38.0
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 8.3e-64 248.4 397 44.3
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 2.0e-62 243.8 407 44.0
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 7.8e-62 241.9 409 39.6
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 6.6e-61 238.8 388 42.3
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.2e-59 234.6 401 41.6
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.6e-59 234.2 408 40.0
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 8.0e-59 231.9 401 45.4
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.0e-58 231.5 411 39.2
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 6.8e-58 228.8 425 43.3
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 2.0e-57 227.3 402 40.5
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 3.4e-57 226.5 402 40.3
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 2.2e-56 223.8 405 38.3
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 3.7e-56 223.0 416 38.9
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 6.4e-56 222.2 428 39.5
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 6.4e-56 222.2 418 39.7
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 8.3e-56 221.9 454 36.1
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.1e-55 221.5 398 37.7
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.4e-55 221.1 408 37.3
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 3.2e-55 219.9 395 44.6
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 3.2e-55 219.9 439 39.4
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 4.1e-55 219.5 394 40.1
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.7e-54 216.9 402 39.8
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 3.5e-54 216.5 376 48.1
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 6.0e-54 215.7 414 42.8
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 7.8e-54 215.3 212 50.0
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 1.0e-53 214.9 400 44.8
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.7e-53 214.2 274 45.3
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 3.0e-53 213.4 403 41.9
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 5.0e-53 212.6 416 39.2
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 5.0e-53 212.6 395 39.0
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 6.6e-53 212.2 279 48.4
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 1.9e-52 210.7 443 42.0
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 3.3e-52 209.9 414 40.6
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 4.3e-52 209.5 276 47.8
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 5.6e-52 209.1 433 42.5
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 9.5e-52 208.4 275 46.2
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.2e-51 208.0 420 41.4
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.2e-51 208.0 452 36.3
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 1.6e-51 207.6 407 43.2
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-51 207.6 319 41.1
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.8e-51 206.8 441 38.8
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 6.2e-51 205.7 413 38.3
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.1e-50 204.9 441 44.0
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.4e-50 204.5 440 35.5
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 5.2e-50 202.6 397 40.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 3.4e-49 199.9 430 40.0
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 3.4e-49 199.9 390 41.0
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 3.4e-49 199.9 496 34.9
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 7.5e-49 198.7 406 36.9
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.9e-48 196.8 384 37.8
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 5.4e-47 192.6 450 36.7
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 7.8e-46 188.7 399 37.3
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.0e-45 188.3 266 45.9
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.0e-45 188.3 201 54.2
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 8.6e-45 185.3 421 36.1
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 5.6e-44 182.6 410 42.2
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.2e-43 181.4 447 34.9
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 3.6e-43 179.9 422 32.9
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 6.8e-42 175.6 408 35.5
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 6.8e-42 175.6 405 44.7
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.2e-40 170.6 335 39.1
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 2.9e-40 170.2 419 36.8
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 1.6e-38 164.5 355 35.5
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 6.0e-38 162.5 402 34.6
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 8.1e-35 152.1 371 31.8
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 9.2e-31 138.7 420 31.0
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.5e-30 136.7 92 64.1
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 3.9e-29 133.3 250 40.0
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 2.2e-24 117.5 413 32.7
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 2.1e-19 100.9 383 31.1
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 2.8e-19 100.5 211 37.9
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 1.5e-17 94.7 317 35.3
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 3.2e-15 87.0 219 37.0
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-14 84.0 56 58.9
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-14 84.0 56 58.9
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 9.6e-12 75.5 264 30.3
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.8e-08 63.5 42 61.9
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 7.1e-07 59.3 81 40.7
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.6e-06 56.6 42 59.5
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.6e-06 56.6 60 43.3


User provided reference genes

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