Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 8.2e-127 457.2 256 100.0
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 2.5e-83 312.8 253 72.7
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 2.3e-81 306.2 253 72.7
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.2e-80 303.9 253 70.8
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.5e-80 303.5 256 67.6
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.5e-80 303.5 252 67.9
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.0e-80 303.1 256 67.6
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.4e-80 302.4 252 67.5
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 3.4e-80 302.4 259 69.9
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.3e-79 300.4 253 71.1
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.7e-79 300.1 252 69.4
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 8.3e-79 297.7 252 66.7
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 3.2e-78 295.8 253 70.4
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 2.0e-77 293.1 253 69.6
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 3.5e-77 292.4 252 69.0
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 1.0e-76 290.8 263 66.9
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 1.7e-76 290.0 252 69.0
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 3.0e-76 289.3 253 68.4
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 4.7e-74 282.0 257 68.9
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 2.3e-73 279.6 252 67.1
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 3.1e-73 279.3 259 61.4
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 6.8e-73 278.1 262 64.9
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 8.9e-73 277.7 260 65.0
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.2e-72 277.3 260 65.4
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 2.0e-72 276.6 262 63.7
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.6e-72 276.2 257 66.9
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 3.4e-72 275.8 257 66.9
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 3.4e-72 275.8 252 67.1
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 7.5e-72 274.6 252 65.5
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.7e-71 273.5 261 67.0
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 2.2e-71 273.1 261 66.7
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 1.1e-70 270.8 256 60.2
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 3.2e-70 269.2 261 60.9
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 9.2e-70 267.7 253 66.0
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 7.8e-69 264.6 255 65.1
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 8.6e-68 261.2 296 59.8
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 1.9e-67 260.0 265 58.9
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 5.6e-67 258.5 257 65.4
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 1.2e-66 257.3 254 65.0
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 2.1e-66 256.5 263 60.8
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.1e-66 256.5 255 63.9
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 2.8e-66 256.1 261 58.2
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 2.8e-66 256.1 261 57.9
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 3.6e-66 255.8 253 60.1
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.1e-65 254.2 261 57.9
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.4e-65 253.8 266 60.5
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 2.3e-65 253.1 253 65.2
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 2.3e-65 253.1 253 65.2
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 8.9e-65 251.1 261 57.5
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.2e-64 250.8 255 64.3
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 2.6e-64 249.6 255 60.8
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 7.5e-64 248.1 265 58.1
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 7.5e-64 248.1 262 59.9
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 7.5e-64 248.1 266 60.2
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 9.9e-64 247.7 253 63.2
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 2.9e-63 246.1 253 63.6
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 3.7e-63 245.7 275 58.9
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 8.3e-63 244.6 293 50.5
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 1.9e-62 243.4 256 62.5
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 4.1e-62 242.3 253 60.1
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.2e-61 240.7 289 50.5
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.6e-61 240.4 261 59.0
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.3e-60 237.3 252 58.7
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 5.1e-60 235.3 254 60.2
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.1e-59 234.2 255 58.0
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.5e-59 233.8 252 58.7
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 1.5e-59 233.8 255 58.8
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 2.5e-59 233.0 255 62.7
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 5.6e-59 231.9 256 60.9
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.6e-58 229.2 253 58.1
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 8.1e-58 228.0 255 58.4
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.1e-57 227.6 252 58.3
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 1.8e-57 226.9 253 56.1
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 4.0e-57 225.7 253 58.9
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 5.2e-57 225.3 264 59.1
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 2.6e-56 223.0 254 59.8
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 7.6e-56 221.5 263 56.7
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 9.9e-56 221.1 264 58.7
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 8.4e-55 218.0 255 57.6
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.4e-54 217.2 293 51.5
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 7.1e-54 214.9 256 54.7
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 6.0e-53 211.8 254 56.7
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 7.8e-53 211.5 253 54.2
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 7.8e-53 211.5 254 54.3
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 3.3e-51 206.1 253 56.1
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 2.8e-50 203.0 253 54.9
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.1e-49 201.1 207 64.7
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 4.0e-49 199.1 251 53.0
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.5e-48 197.2 256 51.6
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.5e-48 197.2 257 48.6
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 7.6e-48 194.9 268 52.2
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 9.3e-46 188.0 254 49.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 1.3e-42 177.6 243 46.1
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 1.8e-41 173.7 257 50.2
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.7e-37 159.8 111 70.3
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 1.8e-36 157.1 298 43.0
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 1.9e-35 153.7 287 44.3
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 2.8e-34 149.8 101 72.3
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 6.9e-33 145.2 210 51.4
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 7.6e-32 141.7 149 60.4
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 3.2e-30 136.3 292 41.1
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 5.1e-28 129.0 217 49.8
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 5.6e-27 125.6 283 39.2
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.8e-24 115.5 189 43.9
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.0e-23 114.8 152 57.2
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 1.3e-23 114.4 70 75.7
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 1.9e-22 110.5 70 72.9
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.2e-22 109.8 188 42.0
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 1.3e-20 104.4 153 52.3
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 8.7e-20 101.7 205 46.8
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 1.8e-17 94.0 288 33.7
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.0e-16 90.5 254 33.9
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.5e-14 82.4 179 39.1
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 3.6e-13 79.7 121 47.9
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.2e-10 70.5 189 33.9
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.3e-09 65.9 150 39.3
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.3e-09 65.9 150 39.3
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 1.2e-08 64.7 61 62.3
MD10G1090400 Malus domestica HOM05D006779 ORTHO05D008491 2.9e-07 60.1 93 52.7
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 2.5e-06 57.0 96 47.9


User provided reference genes

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