Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 2518.4 1234 100.0
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1828.1 1273 70.9
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1817.0 1273 70.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1787.7 1269 69.0
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1786.5 1276 68.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1780.0 1271 68.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1778.8 1282 69.2
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1775.8 1278 67.9
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1768.1 1278 68.1
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1761.1 1272 67.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1760.0 1230 69.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1756.5 1276 67.6
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1755.7 1274 68.1
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1751.5 1280 67.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1746.1 1273 67.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1745.3 1276 67.4
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1744.9 1276 67.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1743.4 1272 67.1
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1741.9 1271 67.7
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1731.1 1273 67.0
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1728.4 1270 67.2
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1268 67.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1278 66.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1722.6 1270 67.0
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1721.8 1268 67.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1719.5 1299 65.7
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1719.1 1268 66.9
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1716.8 1272 65.6
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1711.4 1272 66.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1271 65.2
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1702.2 1272 66.0
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1700.6 1271 65.2
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1700.6 1271 65.5
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1699.1 1273 64.7
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1270 65.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1687.2 1233 67.2
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1283 65.8
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1270 65.6
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1679.1 1271 64.4
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1678.7 1274 65.1
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1673.3 1271 64.4
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1669.4 1275 65.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1668.7 1271 64.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1664.4 1271 63.9
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1659.4 1271 63.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1658.3 1235 66.7
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1641.3 1270 63.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1636.7 1282 63.4
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1632.1 1272 63.6
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1630.9 1379 59.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1627.5 1282 63.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1627.5 1271 63.9
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1627.1 1244 64.9
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1627.1 1287 63.1
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1623.6 1282 62.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1620.5 1278 62.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1618.2 1274 63.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1610.9 1278 62.8
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1609.7 1275 62.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1604.3 1271 62.3
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1602.0 1277 62.5
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1600.5 1274 62.7
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1597.0 1277 62.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1590.1 1279 63.0
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1589.7 1270 62.6
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1587.4 1279 62.9
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1583.5 1285 62.7
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1583.2 1281 62.8
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1580.1 1274 61.9
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1579.3 1287 62.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1578.9 1350 57.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1573.1 1277 61.3
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1572.8 1270 60.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1562.4 1270 61.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1562.4 1272 60.5
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1540.0 1179 64.1
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1539.2 1363 57.4
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1537.3 1272 59.4
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1533.5 1272 59.7
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1533.1 1273 59.2
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1531.2 1273 59.1
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1518.4 1296 58.6
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1502.6 1192 63.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1502.3 1213 60.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1489.6 1249 60.9
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1466.1 1271 58.9
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1447.2 997 69.3
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1431.4 1000 69.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1396.7 1231 56.5
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1389.4 1268 54.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1381.7 1029 66.6
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1366.7 1004 66.8
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1308.9 1286 52.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1268.1 1155 56.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1266.5 1274 53.5
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1221.5 940 65.2
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1201.4 1231 51.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1178.7 1269 50.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1167.9 831 68.0
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1148.3 829 67.4
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1147.9 876 62.6
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1134.8 942 61.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1115.1 832 63.8
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1079.7 942 59.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 1.7e-311 1073.2 806 66.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 6.6e-307 1057.7 780 64.9
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 4.7e-305 1051.6 1334 44.9
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.1e-301 1040.4 1295 45.4
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 3.5e-300 1035.4 1203 46.5
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.6e-295 1019.2 1324 43.7
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 4.6e-292 1008.4 766 65.1
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.5e-290 1002.7 1340 43.9
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.9e-286 988.4 691 69.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 6.0e-276 954.9 1148 46.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.4e-272 943.7 767 63.1
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 3.0e-219 766.5 551 67.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 4.5e-215 752.7 1466 35.4
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.4e-210 736.5 501 71.7
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.3e-209 734.6 614 56.0
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.8e-194 682.6 501 64.1
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.1e-191 674.1 626 55.8
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.8e-158 564.7 469 61.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 9.5e-104 382.9 399 52.9
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.8e-102 378.6 316 60.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.4e-99 368.2 362 54.1
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.2e-90 339.3 333 53.8
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 6.0e-82 310.5 1398 25.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.1e-78 299.7 1007 25.2
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.4e-67 260.8 231 55.8
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 5.3e-46 191.0 236 47.9
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 6.5e-44 184.1 129 69.0
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.3e-41 176.4 152 56.6
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.7e-23 116.3 78 67.9
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 5.3e-22 111.3 70 75.7
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 3.7e-15 88.6 68 58.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.5e-11 76.6 46 80.4
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 3.6e-10 72.0 206 28.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 6.1e-10 71.2 95 38.9
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 4.0e-09 68.6 49 67.3
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 5.2e-09 68.2 42 73.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 8.8e-09 67.4 180 33.9
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 8.8e-09 67.4 48 68.8
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 8.8e-09 67.4 48 68.8
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.1e-08 67.0 49 65.3
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.1e-08 67.0 167 32.3
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 66.7
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.5e-08 66.6 50 62.0
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.5e-08 66.6 95 40.0
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.6e-08 65.9 49 63.3
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.6e-08 65.9 48 66.7
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.4e-08 65.1 60 56.7
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.4e-08 65.1 60 56.7
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.4e-08 65.1 60 56.7
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.4e-08 65.1 60 56.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 5.7e-08 64.7 48 64.6
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.7e-07 63.2 182 30.8
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.1e-06 60.5 118 31.4
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 2.4e-06 59.3 224 26.8
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 3.1e-06 58.9 54 57.4
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 3.1e-06 58.9 118 30.5


User provided reference genes

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