Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 3444.8 1803 100.0
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2501.5 1808 73.5
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2481.1 1822 72.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2456.0 1824 71.9
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2424.8 1828 70.1
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2406.7 1809 69.9
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2398.6 1813 71.2
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2393.6 1817 69.9
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2392.5 1807 70.1
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2389.0 1832 69.5
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2385.5 1802 70.1
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2382.1 1816 69.5
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2377.1 1822 68.4
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2361.3 1812 69.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2354.3 1772 71.4
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2348.2 1743 71.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2347.8 1825 68.6
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2343.9 1825 68.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2330.8 1813 68.2
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2326.6 1877 67.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2321.2 1702 72.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2320.0 1806 67.8
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2312.3 1826 66.9
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2305.8 1767 68.1
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2301.2 1813 68.3
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2300.8 1814 68.3
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2298.1 1815 67.5
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2295.8 1811 67.2
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2293.1 1816 68.2
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2237.2 1806 67.8
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2235.3 1813 66.8
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2234.9 1820 66.3
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2234.9 1885 63.9
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2226.1 1769 66.9
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2219.9 1820 67.1
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2218.4 1808 65.5
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2213.7 1805 65.8
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2197.2 1867 63.8
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2194.5 1822 65.2
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2192.5 1826 63.5
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2189.8 1819 63.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2189.1 1851 63.9
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2188.7 1847 62.8
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2183.7 1890 62.4
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2182.1 1818 63.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2177.9 1828 63.6
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2175.2 1808 64.2
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2165.6 1689 67.7
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2162.1 1859 62.5
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2162.1 1859 62.5
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2147.1 1822 62.5
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2146.7 1825 62.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2144.4 1837 62.3
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2142.1 1818 62.5
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2140.9 1819 63.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2137.1 1862 61.9
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2137.1 1862 61.9
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2130.5 1787 63.7
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2128.2 1826 62.2
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2128.2 1815 62.9
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2125.5 1826 62.2
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2125.1 1693 66.2
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 2124.7 1833 62.0
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2117.4 1839 61.9
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2113.2 1829 61.5
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2111.6 1776 63.1
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2104.7 1820 61.7
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2103.6 1772 63.8
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2085.8 1817 62.3
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2085.8 1828 61.5
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2082.8 1809 63.2
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2080.4 1752 65.0
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2072.7 1591 68.1
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2063.5 1538 70.2
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2053.9 1879 60.6
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2049.6 1457 74.1
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2047.3 1731 63.4
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2024.6 1882 60.4
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2017.3 1809 61.4
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2014.6 1495 70.6
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2014.2 1832 60.5
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1988.4 1682 63.5
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1954.1 1849 59.3
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1949.5 1560 65.8
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1913.7 1872 58.0
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1911.7 1541 66.1
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1894.0 1653 62.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1862.8 1716 58.7
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1826.6 1712 58.8
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1777.3 1345 69.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1718.7 1582 58.3
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1666.4 1788 52.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1644.0 1669 54.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1510.7 1372 59.7
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1452.2 1842 45.3
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1379.0 1799 45.2
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1377.5 1848 43.9
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1330.5 954 71.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1320.8 1747 44.8
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1273.1 1217 58.6
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1257.7 1012 66.0
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 0.0e+00 1076.2 1019 58.6
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.9e-309 1064.7 1097 53.0
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 6.5e-295 1018.5 1569 39.8
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 5.9e-288 995.3 942 57.4
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.3e-268 930.2 787 63.8
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 8.6e-263 911.8 642 71.8
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.4e-244 851.3 660 69.1
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-206 724.5 889 47.1
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.1e-188 664.1 486 69.3
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.5e-174 618.6 565 63.0
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.2e-169 600.9 719 47.0
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 8.8e-159 566.2 438 66.4
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 4.4e-150 537.3 503 59.0
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.0e-146 523.9 512 56.8
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.0e-139 501.9 533 50.5
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 8.0e-136 490.0 510 55.1
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 6.8e-135 486.9 447 61.5
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 9.8e-134 483.0 558 50.4
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.1e-120 436.8 488 51.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.6e-104 384.8 395 59.0
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.3e-101 376.3 291 66.0
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.9e-100 372.5 350 54.6
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.9e-99 367.1 323 58.8
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.9e-95 354.0 282 62.4
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 3.4e-94 351.7 431 49.2
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.7e-83 315.5 372 51.3
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 4.6e-75 288.1 1687 23.2
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 9.0e-71 273.9 282 53.9
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.0e-49 203.0 231 50.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.7e-48 199.9 167 60.5
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 5.0e-45 188.3 397 32.5
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 2.1e-43 183.0 120 76.7
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 5.4e-39 168.3 167 53.3
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.5e-36 160.2 163 57.7
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.2e-34 151.8 437 30.9
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.7e-32 146.7 275 37.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.1e-28 134.0 117 53.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.9e-28 133.3 95 69.5
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.3e-28 132.1 136 55.9
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 4.7e-27 128.6 70 91.4
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.0e-26 127.5 100 67.0
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 2.0e-25 123.2 93 67.7
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 9.8e-25 120.9 94 66.0
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 1.7e-24 120.2 128 56.2
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.3e-24 117.9 78 71.8
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 5.4e-23 115.2 88 67.0
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.0e-21 110.9 78 70.5
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 5.0e-21 108.6 90 63.3
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 5.0e-21 108.6 197 42.6
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.3e-20 105.9 107 57.0
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 7.3e-20 104.8 82 69.5
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 7.3e-20 104.8 85 68.2
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 9.5e-20 104.4 107 56.1
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.6e-19 102.4 71 70.4
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.7e-16 93.6 199 32.2
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.9e-16 92.0 65 72.3
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 2.4e-15 89.7 86 59.3
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 3.2e-15 89.4 83 61.4
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.1e-15 89.0 61 68.9
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 5.4e-15 88.6 93 60.2
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.2e-14 87.4 83 59.0
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 4.6e-14 85.5 112 47.3
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.6e-11 77.0 255 28.6
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 1.1e-10 74.3 53 67.9
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.4e-10 73.9 71 54.9
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.4e-10 73.9 71 54.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 3.1e-10 72.8 109 40.4
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.0e-10 72.4 153 29.4
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 5.2e-10 72.0 71 53.5
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 2.0e-09 70.1 99 44.4
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 1.3e-08 67.4 69 49.3
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.2e-07 62.8 112 39.3


User provided reference genes

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