Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 1.8e-262 908.7 448 100.0
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 1.9e-203 712.6 459 77.6
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 8.0e-202 707.2 429 80.9
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 8.8e-201 703.7 451 76.9
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 2.0e-200 702.6 451 78.3
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 4.4e-200 701.4 451 74.9
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 9.7e-200 700.3 449 77.1
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.3e-199 699.9 454 76.0
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 4.8e-199 698.0 454 75.8
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 4.8e-199 698.0 451 76.7
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.4e-198 696.4 451 77.2
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 2.0e-197 692.6 451 73.8
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.6e-197 692.2 450 74.0
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 5.9e-197 691.0 451 75.6
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 7.7e-197 690.6 459 74.1
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 7.7e-197 690.6 450 74.7
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.7e-197 690.6 451 75.6
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.2e-196 689.1 451 75.4
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.2e-196 689.1 451 75.4
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.9e-196 688.7 451 73.8
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.9e-196 688.7 459 73.9
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 3.8e-196 688.3 451 73.6
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.9e-195 686.0 486 71.6
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 2.5e-195 685.6 447 73.4
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.5e-195 685.6 451 75.4
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.2e-192 676.8 429 76.5
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 4.4e-192 674.9 451 74.3
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 4.4e-192 674.9 454 73.3
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 4.4e-192 674.9 459 72.8
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 5.7e-192 674.5 451 74.5
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 9.7e-192 673.7 449 73.3
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.3e-191 673.3 458 73.6
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 6.3e-191 671.0 455 73.4
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.6e-189 666.4 455 73.4
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 4.5e-189 664.8 456 71.7
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 7.7e-189 664.1 428 76.6
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.7e-188 662.9 455 72.3
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 2.2e-188 662.5 460 71.3
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 2.9e-188 662.1 455 71.9
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 2.9e-188 662.1 458 71.2
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 2.9e-188 662.1 455 72.3
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 2.5e-187 659.1 428 74.8
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 6.1e-186 654.4 457 70.0
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 6.1e-186 654.4 430 74.4
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 8.0e-186 654.1 458 71.8
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 1.4e-185 653.3 456 69.5
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 3.0e-185 652.1 438 73.3
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 3.0e-185 652.1 450 70.2
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 3.0e-185 652.1 457 70.7
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 4.0e-185 651.7 458 70.7
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 2.0e-184 649.4 452 70.8
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.0e-184 649.4 454 71.1
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 3.4e-184 648.7 453 71.3
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 5.7e-184 647.9 449 70.4
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 5.7e-184 647.9 457 70.5
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.5e-184 647.5 450 71.1
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 9.8e-184 647.1 448 70.1
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.3e-183 646.7 450 70.4
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.7e-183 646.4 459 69.7
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 4.1e-182 641.7 459 70.2
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 5.4e-182 641.3 402 78.9
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 5.4e-182 641.3 418 74.9
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 5.4e-182 641.3 455 69.2
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.6e-181 639.8 455 69.0
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 2.0e-181 639.4 413 74.6
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 2.7e-181 639.0 458 71.4
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 3.8e-180 635.2 451 69.2
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 3.8e-180 635.2 449 68.4
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 5.0e-180 634.8 450 69.6
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.5e-179 631.3 450 69.6
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 5.5e-179 631.3 453 69.3
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 2.1e-178 629.4 459 68.2
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.0e-177 627.1 454 68.9
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.8e-177 626.3 514 61.9
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 4.0e-177 625.2 453 68.9
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.5e-176 623.2 454 68.1
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 4.4e-176 621.7 454 68.7
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 2.8e-175 619.0 411 74.9
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 5.4e-174 614.8 436 73.2
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 4.5e-173 611.7 455 66.2
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.7e-172 609.8 454 65.6
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 3.8e-172 608.6 454 67.4
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 6.6e-172 607.8 455 67.9
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.1e-171 607.1 455 67.3
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.5e-171 606.7 454 67.0
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.6e-170 603.2 454 67.2
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 4.0e-169 598.6 488 63.9
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 3.7e-167 592.0 383 75.7
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 5.4e-166 588.2 458 64.2
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 5.4e-166 588.2 450 66.4
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 7.0e-166 587.8 461 63.6
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.5e-163 580.1 385 74.5
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.9e-163 579.7 457 63.7
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.2e-160 570.5 454 64.1
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 8.6e-156 554.3 411 69.6
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 5.1e-140 501.9 372 68.0
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.1e-134 484.2 371 68.2
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 8.1e-130 468.0 458 50.4
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 3.1e-129 466.1 467 49.9
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 3.9e-124 449.1 459 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 4.5e-120 435.6 454 48.7
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.7e-119 433.7 337 65.0
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 7.9e-117 424.9 455 47.9
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 6.7e-116 421.8 289 74.0
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 8.7e-108 394.8 311 65.0
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 2.5e-102 376.7 514 40.7
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 9.7e-99 364.8 394 49.5
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 5.3e-89 332.4 465 41.1
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.1e-78 298.1 245 66.9
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.2e-75 288.1 191 68.6
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.1e-70 271.6 442 37.3
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.2e-69 268.1 191 67.5
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.2e-69 268.1 223 59.6
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 3.0e-39 167.2 500 27.0
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.9e-38 164.5 290 34.1
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.6e-37 161.4 137 59.1
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.2e-19 102.1 124 37.9
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 9.0e-12 75.9 318 23.0
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.2e-11 75.5 354 24.3
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 4.5e-11 73.6 318 22.6
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 7.6e-11 72.8 318 22.3
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.3e-10 72.0 318 22.3
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 1.4e-09 68.6 325 21.8
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.9e-09 68.2 322 21.7
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 2.4e-09 67.8 325 21.5
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 3.2e-09 67.4 325 21.5
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 4.2e-09 67.0 325 21.8
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 7.1e-09 66.2 325 21.5
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.2e-08 65.5 325 21.8
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 1.2e-08 65.5 325 21.8
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 1.2e-08 65.5 325 21.8
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 1.2e-08 65.5 325 21.8
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 1.2e-08 65.5 325 21.8
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 1.6e-08 65.1 318 21.1
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 1.6e-08 65.1 318 21.1
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 2.1e-08 64.7 216 23.6
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 2.1e-08 64.7 216 23.6
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 2.1e-08 64.7 336 20.2
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 3.5e-08 63.9 310 22.3
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 1.0e-07 62.4 318 21.1
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 1.3e-07 62.0 318 21.1
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 1.3e-07 62.0 318 21.1
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 1.3e-07 62.0 325 20.9
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.3e-07 61.2 214 23.8
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 2.3e-07 61.2 318 21.1
Oeu044822.1 Olea europaea HOM05D002303 ORTHO05D006504 3.0e-07 60.8 257 22.6
Cre02.g085050 Chlamydomonas reinhardtii HOM05D000684 ORTHO05D000688 5.1e-07 60.1 155 27.7
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 5.1e-07 60.1 156 26.9
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 5.1e-07 60.1 134 26.9
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 8.7e-07 59.3 216 24.5
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 8.7e-07 59.3 318 20.8
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 8.7e-07 59.3 318 20.8
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 8.7e-07 59.3 318 20.8
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 1.1e-06 58.9 318 20.8
TAR383G0657 Trochodendron aralioides HOM05D003006 ORTHO05D003438 1.1e-06 58.9 193 24.4
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.5e-06 58.5 205 25.9
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.5e-06 58.5 206 25.7
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.5e-06 58.5 156 26.9
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.9e-06 58.2 116 29.3
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 2.5e-06 57.8 216 23.6
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 3.3e-06 57.4 131 30.5
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 4.3e-06 57.0 120 27.5
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 4.3e-06 57.0 130 27.7
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 5.6e-06 56.6 318 20.4
PSO541G1463 Papaver somniferum HOM05D000684 ORTHO05D000688 5.6e-06 56.6 108 28.7
Sc25g0005650 Simmondsia chinensis HOM05D000997 ORTHO05D000828 5.6e-06 56.6 103 34.0
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 5.6e-06 56.6 239 21.8
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 7.4e-06 56.2 318 20.8
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 7.4e-06 56.2 318 20.4
PSO675G4498 Papaver somniferum HOM05D000684 ORTHO05D000688 7.4e-06 56.2 108 28.7
TWI36G1526 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 7.4e-06 56.2 126 28.6
TAR362G1317 Trochodendron aralioides HOM05D003335 ORTHO05D003853 7.4e-06 56.2 206 28.2
Lalb_Chr17g0347231 Lupinus albus HOM05D000684 ORTHO05D000688 9.6e-06 55.8 108 28.7
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 9.6e-06 55.8 192 27.6


User provided reference genes

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