Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 6.0e-55 217.2 107 100.0
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 8.1e-52 206.8 107 94.4
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 93.5
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 93.5
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 4.0e-51 204.5 107 93.5
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 6.8e-51 203.8 107 93.5
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 92.5
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 93.5
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 92.5
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 92.5
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 92.5
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 1.5e-50 202.6 107 93.5
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 93.5
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 93.5
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 93.5
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 91.6
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 92.5
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 2.0e-50 202.2 107 93.5
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 2.6e-50 201.8 106 93.4
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 2.6e-50 201.8 106 93.4
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 2.6e-50 201.8 106 93.4
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 92.5
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 91.6
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 92.5
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 92.5
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 91.6
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 90.7
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 7.5e-50 200.3 107 91.6
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 9.9e-50 199.9 105 93.3
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 9.9e-50 199.9 105 93.3
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 90.7
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 91.6
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 90.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 89.7
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 90.7
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 2.2e-49 198.7 106 89.6
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 91.6
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 89.7
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 90.7
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 90.7
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 90.7
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 90.7
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 3.7e-49 198.0 105 91.4
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 89.7
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 90.7
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 88.8
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 89.7
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 90.7
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 89.7
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 87.9
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 88.8
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 89.7
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 88.8
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 88.8
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 87.9
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 88.8
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 86.9
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 88.8
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 90.7
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 90.7
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 86.9
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 87.9
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 88.8
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 88.8
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 88.8
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 86.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 87.9
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.3e-46 189.5 106 85.8
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.9
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 83.2
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.9e-46 188.0 117 82.1
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 3.9e-46 188.0 123 78.0
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 86.0
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 85.0
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 85.0
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 82.2
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 85.0
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 85.0
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 84.1
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 5.6e-45 184.1 133 72.9
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 83.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 83.2
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 83.2
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 82.2
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 4.7e-44 181.0 105 82.9
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 80.4
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 2.4e-43 178.7 104 82.7
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 6.8e-43 177.2 106 77.4
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 3.4e-42 174.9 104 79.8
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 7.6e-42 173.7 94 88.3
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 7.6e-42 173.7 107 82.2
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.3e-41 172.9 98 83.7
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 4.9e-41 171.0 94 88.3
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 1.9e-40 169.1 104 76.0
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.6e-39 164.5 107 72.0
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 3.3e-37 158.3 165 55.8
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 7.3e-37 157.1 107 72.9
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 1.8e-35 152.5 83 88.0
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.8e-35 152.5 107 64.5
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 5.2e-35 151.0 107 72.9
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 9.0e-35 150.2 107 62.6
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 4.4e-34 147.9 107 63.6
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 9.9e-34 146.7 107 61.7
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 9.3e-32 140.2 106 59.4
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.1e-29 133.3 71 88.7
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 1.6e-28 129.4 107 60.7
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.4e-27 125.6 107 59.8
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 1.4e-24 116.3 93 61.3
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 7.1e-24 114.0 83 74.7
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 2.7e-23 112.1 60 95.0
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 2.7e-23 112.1 60 95.0
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 1.0e-22 110.2 66 81.8
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.8e-22 109.4 60 91.7
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 3.9e-22 108.2 60 91.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 2.5e-21 105.5 100 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 9.6e-21 103.6 105 44.8
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 1.4e-19 99.8 107 57.9
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 1.4e-19 99.8 107 57.9
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 9.9e-18 93.6 83 59.0
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.2e-17 92.4 98 46.9
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 9.3e-16 87.0 62 74.2
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 1.8e-14 82.8 100 38.0
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 5.1e-14 81.3 51 78.4
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 4.0e-11 71.6 47 76.6
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 6.9e-11 70.9 92 34.8
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 1.1e-08 63.5 36 83.3
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 2.1e-07 59.3 34 70.6
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 1.3e-06 56.6 38 76.3


User provided reference genes

Program Settings