Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 2040.0 1029 100.0
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1277.3 959 69.4
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1216.8 984 65.1
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1204.9 988 64.3
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1201.4 984 64.6
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1177.5 972 65.0
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1169.1 1008 62.7
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1164.4 983 63.9
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1163.7 1017 62.6
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1155.2 942 65.5
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1154.8 942 65.2
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1151.0 984 63.6
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1149.4 972 63.6
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1149.4 951 64.6
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1138.3 1018 61.8
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1135.6 1002 62.6
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1132.9 1018 60.7
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1129.0 978 62.4
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1126.7 992 62.0
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1124.4 990 62.1
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1123.6 995 61.2
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1122.5 988 61.7
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1121.7 963 62.9
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1120.5 1001 61.8
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1118.2 1061 60.2
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1117.4 992 62.0
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1117.4 999 60.9
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1116.3 1064 60.4
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1115.1 1062 60.5
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1114.8 1066 60.1
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1114.8 1059 60.1
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1093.2 982 62.0
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1084.7 986 59.7
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1080.9 980 61.8
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1075.8 987 59.6
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 3.4e-309 1065.1 967 60.0
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 1.1e-307 1060.1 1001 58.2
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 2.7e-306 1055.4 977 59.7
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 8.0e-306 1053.9 903 61.8
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 1.8e-305 1052.7 972 59.7
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 2.3e-305 1052.4 978 59.1
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 2.3e-305 1052.4 950 60.3
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 2.3e-305 1052.4 998 58.5
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 1.3e-303 1046.6 970 59.2
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 5.3e-302 1041.2 961 59.2
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 1.6e-301 1039.6 1002 58.4
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 6.5e-300 1034.2 974 58.7
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 8.5e-300 1033.9 948 60.1
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.9e-299 1032.7 953 59.7
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 7.2e-299 1030.8 954 59.7
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 3.6e-298 1028.5 949 60.1
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 4.7e-298 1028.1 954 59.6
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 5.2e-297 1024.6 981 58.0
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 6.3e-295 1017.7 954 59.7
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 3.8e-292 1008.4 905 60.9
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 1.1e-291 1006.9 941 57.5
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.3e-289 999.2 906 61.4
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 4.4e-288 995.0 964 58.0
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 3.1e-286 988.8 953 59.1
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 6.6e-284 981.1 799 66.5
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 2.3e-281 972.6 1058 53.5
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 6.8e-281 971.1 983 57.2
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 4.4e-280 968.4 859 62.5
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 9.5e-275 950.7 967 53.2
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 8.9e-265 917.5 1018 51.6
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 3.2e-262 909.1 1028 52.4
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 3.5e-261 905.6 988 53.3
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 8.6e-260 901.0 689 70.0
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 3.6e-258 895.6 830 59.3
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 5.2e-257 891.7 760 64.5
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 7.6e-256 887.9 973 53.8
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 6.4e-255 884.8 758 63.9
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 4.6e-253 878.6 750 64.1
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.5e-248 863.6 969 52.7
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 2.6e-248 862.8 994 51.5
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 7.6e-248 861.3 992 51.2
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 2.1e-245 853.2 945 52.7
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 3.5e-245 852.4 919 55.3
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 4.6e-245 852.0 766 62.1
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 2.3e-244 849.7 716 63.7
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 2.3e-244 849.7 908 54.0
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.1e-241 839.3 861 56.1
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 5.3e-241 838.6 907 53.6
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.4e-238 830.5 772 59.3
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 2.1e-237 826.6 838 56.8
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.0e-236 824.3 951 51.7
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.3e-236 823.2 828 58.3
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 2.3e-236 823.2 949 51.6
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.8e-233 813.5 588 73.3
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.7e-231 807.0 1000 47.9
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 2.2e-231 806.6 799 56.9
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 2.0e-224 783.5 718 59.1
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 1.9e-219 766.9 1038 46.8
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 2.6e-216 756.5 692 60.1
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.4e-206 724.2 685 57.8
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 9.4e-206 721.5 975 47.0
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 3.6e-205 719.5 1022 46.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.7e-202 709.5 712 57.0
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 3.8e-199 699.5 760 51.6
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 3.2e-182 643.3 729 52.4
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 2.3e-180 637.1 926 41.8
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 5.2e-172 609.4 581 59.2
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 5.7e-171 605.9 1063 40.9
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 8.3e-162 575.5 972 38.8
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 3.6e-157 560.1 745 47.8
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 3.9e-151 540.0 715 43.9
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 3.2e-145 520.4 1098 37.3
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 7.1e-129 466.1 575 46.8
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 6.1e-96 356.7 417 51.3
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.4e-68 265.8 208 65.4
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 9.4e-65 253.1 230 58.7
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 1.8e-52 212.2 413 31.5
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.1e-49 203.0 197 60.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 8.0e-40 170.2 317 33.1
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 3.2e-28 131.7 546 26.9
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 4.7e-24 117.9 123 51.2
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 8.4e-21 107.1 83 66.3
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 9.2e-20 103.6 80 66.2
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-18 100.1 501 24.8
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-15 88.2 130 42.3
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.2e-14 86.7 71 50.7
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 2.2e-13 82.4 70 62.9
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 1.3e-10 73.2 109 39.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 2.5e-09 68.9 41 85.4
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.8e-08 65.5 38 89.5
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 3.6e-08 65.1 134 30.6
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 6.2e-08 64.3 102 30.4
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 5.3e-07 61.2 110 27.3
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 6.9e-07 60.8 78 32.1
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 1.5e-06 59.7 67 37.3
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 2.0e-06 59.3 97 25.8
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 2.0e-06 59.3 65 41.5
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 2.6e-06 58.9 66 40.9
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.4e-06 58.5 151 23.8
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 7.6e-06 57.4 78 26.9
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 9.9e-06 57.0 78 28.2


User provided reference genes

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