Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0608000 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D296482 8.7e-69 263.5 128 100.0
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 1.7e-08 63.2 85 42.4
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 3.8e-08 62.0 79 41.8
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 5.0e-08 61.6 79 41.8
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 5.0e-08 61.6 79 43.0
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 6.5e-08 61.2 75 45.3
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 6.5e-08 61.2 79 40.5
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 8.5e-08 60.8 79 43.0
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 8.5e-08 60.8 75 44.0
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 8.5e-08 60.8 75 45.3
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 8.5e-08 60.8 75 45.3
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 8.5e-08 60.8 75 45.3
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 1.1e-07 60.5 79 45.6
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 1.1e-07 60.5 75 45.3
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.1e-07 60.5 75 44.0
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 1.5e-07 60.1 75 45.3
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.9e-07 59.7 75 44.0
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.9e-07 59.7 79 43.0
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.9e-07 59.7 79 43.0
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.9e-07 59.7 79 43.0
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 2.5e-07 59.3 75 44.0
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.5e-07 59.3 75 42.7
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.5e-07 59.3 79 40.5
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.5e-07 59.3 75 42.7
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 2.5e-07 59.3 91 37.4
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 45.3
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 42.7
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 3.2e-07 58.9 75 44.0
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 4.2e-07 58.5 75 44.0
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 4.2e-07 58.5 75 44.0
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.2e-07 58.5 79 43.0
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 4.2e-07 58.5 75 44.0
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 4.2e-07 58.5 75 42.7
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 44.0
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 5.5e-07 58.2 79 41.8
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 44.0
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 5.5e-07 58.2 79 41.8
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 44.0
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 44.0
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 45.3
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 44.0
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 42.7
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 5.5e-07 58.2 74 44.6
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 42.7
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 42.7
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 5.5e-07 58.2 75 41.3
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.2e-07 57.8 75 42.7
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.2e-07 57.8 75 42.7
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 7.2e-07 57.8 75 44.0
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 7.2e-07 57.8 75 42.7
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 7.2e-07 57.8 75 45.3
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 7.2e-07 57.8 75 42.7
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 7.2e-07 57.8 110 38.2
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 9.4e-07 57.4 75 44.0
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 9.4e-07 57.4 75 42.7
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 9.4e-07 57.4 75 42.7
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 9.4e-07 57.4 75 42.7
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 40.0
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 42.7
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 42.7
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 42.7
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 42.7
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 44.0
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 44.0
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 44.0
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 44.0
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 1.2e-06 57.0 96 41.7
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 44.0
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 41.3
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.2e-06 57.0 75 42.7
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.6e-06 56.6 75 42.7
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 1.6e-06 56.6 75 42.7
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 41.3
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 41.3
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 41.3
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 42.7
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 42.7
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 42.7
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 41.3
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 41.3
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 42.7
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 2.1e-06 56.2 75 42.7
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.7e-06 55.8 75 42.7
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 2.7e-06 55.8 75 41.3
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 2.7e-06 55.8 75 41.3
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 3.6e-06 55.5 75 42.7
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 3.6e-06 55.5 75 40.0
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 3.6e-06 55.5 75 41.3
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 3.6e-06 55.5 79 40.5
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 4.7e-06 55.1 75 41.3
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 4.7e-06 55.1 75 41.3
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 4.7e-06 55.1 75 38.7
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 4.7e-06 55.1 75 42.7
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 4.7e-06 55.1 75 40.0
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 6.1e-06 54.7 75 41.3
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 6.1e-06 54.7 75 42.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 6.1e-06 54.7 75 42.7
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.1e-06 54.7 74 40.5
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.1e-06 54.7 69 42.0
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 6.1e-06 54.7 75 40.0
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 8.0e-06 54.3 75 40.0
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 8.0e-06 54.3 75 42.7
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 8.0e-06 54.3 75 41.3
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 8.0e-06 54.3 109 38.5


User provided reference genes

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