Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 2.3e-99 365.5 181 100.0
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.4e-27 127.1 161 42.2
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 2.6e-18 96.3 89 48.3
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 4.4e-18 95.5 93 46.2
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 4.4e-18 95.5 102 43.1
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 7.5e-18 94.7 97 44.3
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 9.9e-18 94.4 81 50.6
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.3e-17 94.0 77 51.9
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 1.3e-17 94.0 94 48.9
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 2.2e-17 93.2 104 43.3
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 2.9e-17 92.8 86 48.8
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.9e-17 92.8 88 48.9
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 2.9e-17 92.8 106 47.2
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 2.9e-17 92.8 95 46.3
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 3.7e-17 92.4 85 47.1
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 6.4e-17 91.7 87 47.1
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 6.4e-17 91.7 88 46.6
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 6.4e-17 91.7 87 47.1
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 8.3e-17 91.3 80 52.5
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 8.3e-17 91.3 94 47.9
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 8.3e-17 91.3 90 46.7
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.4e-16 90.5 98 43.9
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 1.4e-16 90.5 89 46.1
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.2e-16 89.4 90 46.7
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 3.2e-16 89.4 96 42.7
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 3.2e-16 89.4 91 47.3
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 4.1e-16 89.0 97 46.4
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 5.4e-16 88.6 79 51.9
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 5.4e-16 88.6 119 38.7
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 9.2e-16 87.8 79 48.1
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 9.2e-16 87.8 88 48.9
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 9.2e-16 87.8 86 47.7
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.2e-15 87.4 87 44.8
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.6e-15 87.0 95 43.2
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.6e-15 87.0 96 42.7
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.1e-15 86.7 95 43.2
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 2.1e-15 86.7 123 36.6
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 2.1e-15 86.7 85 48.2
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.7e-15 86.3 101 41.6
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.5e-15 85.9 88 43.2
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 3.5e-15 85.9 88 44.3
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.5e-15 85.9 82 50.0
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 3.5e-15 85.9 146 34.9
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 3.5e-15 85.9 184 32.1
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 4.6e-15 85.5 86 46.5
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 4.6e-15 85.5 82 47.6
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 6.0e-15 85.1 76 50.0
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 7.8e-15 84.7 92 42.4
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 7.8e-15 84.7 99 39.4
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 7.8e-15 84.7 102 42.2
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 7.8e-15 84.7 102 42.2
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 7.8e-15 84.7 81 48.1
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.8e-15 84.7 150 34.7
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 7.8e-15 84.7 117 39.3
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.0e-14 84.3 84 42.9
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 1.0e-14 84.3 86 43.0
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 1.3e-14 84.0 93 44.1
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 1.3e-14 84.0 79 48.1
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.7e-14 83.6 78 48.7
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.7e-14 83.6 115 40.9
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.7e-14 83.6 76 50.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.7e-14 83.6 100 46.0
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.3e-14 83.2 76 48.7
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 2.3e-14 83.2 75 50.7
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 2.3e-14 83.2 83 49.4
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.3e-14 83.2 87 46.0
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.3e-14 83.2 86 46.5
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 2.3e-14 83.2 169 32.5
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 2.3e-14 83.2 126 38.9
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.3e-14 83.2 98 39.8
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 3.0e-14 82.8 79 48.1
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 3.0e-14 82.8 79 48.1
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 3.0e-14 82.8 76 48.7
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 3.0e-14 82.8 95 42.1
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 3.0e-14 82.8 111 36.9
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 3.9e-14 82.4 80 47.5
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 3.9e-14 82.4 80 47.5
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 3.9e-14 82.4 88 46.6
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 3.9e-14 82.4 183 32.8
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 3.9e-14 82.4 79 49.4
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 5.1e-14 82.0 79 48.1
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 5.1e-14 82.0 91 45.1
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 5.1e-14 82.0 75 46.7
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 5.1e-14 82.0 94 43.6
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 5.1e-14 82.0 75 50.7
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 5.1e-14 82.0 75 49.3
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 6.6e-14 81.6 85 43.5
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 6.6e-14 81.6 79 46.8
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 6.6e-14 81.6 140 32.9
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 6.6e-14 81.6 76 47.4
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 8.6e-14 81.3 97 40.2
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.1e-13 80.9 109 37.6
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.5e-13 80.5 86 44.2
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.5e-13 80.5 90 42.2
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.5e-13 80.5 86 41.9
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 1.9e-13 80.1 80 46.2
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 1.9e-13 80.1 80 46.2
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 1.9e-13 80.1 80 46.2
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.9e-13 80.1 79 45.6
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 1.9e-13 80.1 75 49.3
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 2.5e-13 79.7 139 35.3
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.5e-13 79.7 101 41.6
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.3e-13 79.0 105 38.1
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 4.3e-13 79.0 94 41.5
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 4.3e-13 79.0 79 43.0
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 5.6e-13 78.6 110 39.1
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 5.6e-13 78.6 115 37.4
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.6e-13 78.6 97 43.3
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 5.6e-13 78.6 86 43.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 7.3e-13 78.2 125 35.2
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 7.3e-13 78.2 82 45.1
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 7.3e-13 78.2 79 44.3
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 9.6e-13 77.8 101 40.6
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 9.6e-13 77.8 90 40.0
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 9.6e-13 77.8 89 42.7
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 1.2e-12 77.4 161 31.7
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.6e-12 77.0 161 31.7
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 2.1e-12 76.6 79 44.3
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 2.1e-12 76.6 104 37.5
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.1e-12 76.6 138 37.7
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 2.1e-12 76.6 89 44.9
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 2.1e-12 76.6 108 37.0
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 2.8e-12 76.3 78 46.2
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 2.8e-12 76.3 109 39.4
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 2.8e-12 76.3 83 42.2
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 2.8e-12 76.3 148 32.4
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 2.8e-12 76.3 86 43.0
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 3.6e-12 75.9 86 40.7
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.6e-12 75.9 86 44.2
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 4.7e-12 75.5 84 42.9
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 6.2e-12 75.1 95 42.1
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 6.2e-12 75.1 95 42.1
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.1e-11 74.3 85 42.4
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.4e-11 73.9 85 42.4
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 1.4e-11 73.9 87 41.4
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 1.4e-11 73.9 79 44.3
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.4e-11 73.9 96 42.7
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.4e-11 73.9 67 47.8
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.8e-11 73.6 85 42.4
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.8e-11 73.6 80 41.2
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 3.1e-11 72.8 86 40.7
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 3.1e-11 72.8 86 40.7
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 3.1e-11 72.8 86 40.7
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 3.1e-11 72.8 177 29.9
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 3.1e-11 72.8 123 34.1
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 4.0e-11 72.4 88 39.8
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 4.0e-11 72.4 129 34.1
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 5.2e-11 72.0 86 40.7
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 8.9e-11 71.2 158 31.6
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.2e-10 70.9 86 40.7
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 1.2e-10 70.9 91 38.5
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 1.5e-10 70.5 81 39.5
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.4e-10 69.3 85 41.2
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 3.4e-10 69.3 87 36.8
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 4.4e-10 68.9 75 44.0
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 5.8e-10 68.6 78 42.3
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 5.8e-10 68.6 84 42.9
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 9.9e-10 67.8 77 42.9
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 9.9e-10 67.8 77 42.9
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 9.9e-10 67.8 82 41.5
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 9.9e-10 67.8 82 41.5
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 9.9e-10 67.8 81 39.5
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.7e-09 67.0 78 42.3
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.7e-09 67.0 95 36.8
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 4.9e-09 65.5 84 41.7
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 4.9e-09 65.5 82 39.0
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 6.4e-09 65.1 77 41.6
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.1e-08 64.3 77 41.6
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.4e-08 63.9 124 32.3
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 1.4e-08 63.9 73 42.5
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.2e-07 60.8 50 50.0
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 3.9e-06 55.8 49 51.0
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 5.1e-06 55.5 64 34.4


User provided reference genes

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