Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1911.0 948 100.0
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1758.8 960 91.0
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1472.6 944 74.9
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 944 74.7
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 944 75.2
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1462.6 947 74.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1458.7 952 73.7
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1455.7 952 73.8
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1451.4 943 74.1
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1450.3 955 73.7
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1445.6 954 73.8
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1443.7 947 73.3
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1442.6 946 73.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1442.2 952 73.2
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1441.4 945 73.1
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1440.6 945 73.1
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1436.8 940 73.5
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1436.0 947 73.3
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1435.6 945 73.3
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1435.2 951 73.4
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1433.7 945 72.8
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1431.8 953 72.6
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1430.6 950 73.2
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1428.7 945 72.8
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1427.9 948 73.2
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1427.2 943 73.3
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1427.2 947 73.3
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1425.6 948 73.7
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1425.2 949 72.7
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1424.8 943 72.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1424.5 944 72.6
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1424.5 948 73.6
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1424.1 949 72.7
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1422.9 955 72.1
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1421.8 948 73.5
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1420.6 945 73.1
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1418.7 944 72.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1417.9 943 72.9
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1417.9 943 72.9
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1417.9 956 72.4
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1417.5 959 72.2
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1417.5 947 71.9
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1416.4 948 72.0
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1416.4 944 72.8
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1415.6 947 72.0
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1413.7 945 73.8
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1411.7 984 70.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1411.7 946 71.8
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1411.0 948 73.0
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1409.8 948 73.0
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1409.4 947 71.7
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1409.0 960 71.7
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1406.7 953 72.1
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1406.3 957 72.0
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1405.6 957 72.0
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1405.6 944 72.1
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1404.4 958 71.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1404.0 947 72.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1404.0 954 71.6
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1403.3 943 72.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1403.3 958 71.5
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1401.0 951 71.6
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1400.6 944 72.5
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1400.2 953 71.0
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1399.4 949 71.3
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1399.0 950 72.2
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1399.0 944 71.5
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1398.6 944 72.2
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1398.3 947 71.6
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1397.5 943 71.8
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1395.6 957 70.8
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1393.6 945 71.4
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1391.7 963 70.8
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1391.7 945 71.9
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1391.7 943 71.7
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1391.7 965 70.7
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1389.0 955 71.2
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1386.7 946 71.5
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1384.4 941 70.2
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1382.9 945 71.3
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1380.9 944 69.9
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1380.9 944 69.9
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1380.5 964 70.5
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1379.8 946 70.5
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1379.4 961 70.6
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1378.6 941 70.4
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1375.9 943 69.4
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1375.9 961 70.4
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1375.5 944 69.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1375.1 946 69.7
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1373.2 943 69.4
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1370.9 940 70.1
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1370.5 943 69.1
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1370.5 943 69.1
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1368.2 943 69.0
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1366.3 955 70.4
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1363.2 944 69.2
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1361.7 944 69.8
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1355.9 945 69.5
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1345.1 954 69.7
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1337.0 957 66.8
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1312.7 944 68.2
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1310.8 957 67.4
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1294.3 943 66.9
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1288.1 947 66.8
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1253.8 840 73.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1229.9 862 70.6
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1226.8 857 71.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1222.2 943 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1198.7 950 60.6
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1172.9 987 58.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1132.1 734 73.2
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1118.2 1009 55.3
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1086.6 944 57.4
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1078.9 707 73.7
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 2.1e-308 1062.4 949 57.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.8e-283 979.5 668 72.5
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.4e-280 969.9 645 73.5
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 2.9e-270 935.6 711 65.1
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 3.5e-223 779.2 755 52.8
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 5.1e-198 695.7 463 73.4
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.1e-180 637.1 442 70.8
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.7e-134 482.6 303 74.3
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 6.4e-108 396.4 647 38.0
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 2.7e-106 391.0 1311 24.6
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 3.8e-68 264.2 201 66.2
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.5e-64 252.3 209 63.2
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.2e-59 234.2 195 65.1
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.8e-55 220.7 297 42.1
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.1e-43 183.0 198 48.0
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.1e-42 178.7 106 73.6
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 8.2e-39 166.8 139 62.6
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 6.9e-38 163.7 118 60.2
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.7e-26 124.4 64 82.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 4.5e-13 81.3 80 55.0
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 9.1e-06 57.0 45 66.7


User provided reference genes

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