Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 9.6e-228 793.5 512 100.0
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.2e-169 600.5 396 83.6
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.0e-169 599.7 401 82.0
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 7.4e-127 458.4 395 66.3
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 4.8e-126 455.7 408 65.2
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.8e-125 453.8 402 63.7
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 5.3e-125 452.2 406 64.0
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 6.9e-125 451.8 392 65.3
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 9.0e-125 451.4 516 60.3
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 9.0e-125 451.4 393 63.9
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 2.0e-124 450.3 405 64.2
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 2.6e-124 449.9 403 64.8
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 4.5e-124 449.1 393 63.6
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 5.8e-124 448.7 514 59.9
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 9.9e-124 448.0 392 65.3
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 1.3e-123 447.6 415 61.7
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 2.2e-123 446.8 516 54.7
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.9e-123 446.4 406 64.3
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 8.4e-123 444.9 401 62.1
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.9e-122 443.7 511 57.3
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.9e-122 443.7 392 64.8
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 9.3e-122 441.4 404 62.9
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.2e-121 441.0 404 62.6
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 4.6e-121 439.1 403 62.8
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 6.0e-121 438.7 397 62.2
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 1.3e-120 437.6 391 63.9
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 2.3e-120 436.8 395 62.5
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 3.0e-120 436.4 395 63.3
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 3.0e-120 436.4 404 62.1
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.9e-120 436.0 398 63.3
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 5.1e-120 435.6 437 58.4
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.1e-119 434.5 391 63.2
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.5e-119 434.1 391 62.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 3.3e-119 433.0 501 57.5
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 3.3e-119 433.0 401 62.1
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 9.6e-119 431.4 400 63.0
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 9.6e-119 431.4 395 61.8
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.6e-118 430.6 401 61.1
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.6e-118 430.6 511 53.6
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 3.7e-118 429.5 396 61.9
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 4.8e-118 429.1 378 65.6
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 8.1e-118 428.3 398 61.6
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 8.1e-118 428.3 395 62.3
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 1.1e-117 427.9 396 61.4
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.8e-117 427.2 392 61.5
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 1.8e-117 427.2 398 62.3
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.4e-117 426.8 396 61.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.4e-117 426.8 392 61.5
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 9.0e-117 424.9 517 53.0
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.6e-116 423.3 392 61.0
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 7.6e-116 421.8 512 53.3
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.7e-115 420.6 404 62.1
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 4.9e-115 419.1 400 61.2
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 4.9e-115 419.1 406 61.6
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.1e-114 417.9 386 60.9
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.4e-114 417.5 410 53.4
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 3.2e-114 416.4 397 58.9
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.2e-113 414.5 395 60.0
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.6e-113 414.1 403 61.8
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.1e-113 413.7 404 61.6
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.1e-113 413.7 400 60.0
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 2.7e-113 413.3 395 61.0
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 3.5e-113 412.9 400 60.2
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 4.6e-113 412.5 404 61.6
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 4.6e-113 412.5 404 59.7
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 6.0e-113 412.1 417 58.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.0e-112 411.4 396 61.4
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.8e-112 410.6 404 61.1
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 2.3e-112 410.2 395 61.3
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.5e-111 407.5 391 60.6
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.5e-111 406.8 395 59.5
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 3.3e-111 406.4 499 46.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 4.3e-111 406.0 386 61.1
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 7.4e-111 405.2 385 57.9
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.6e-110 404.1 395 59.5
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 2.1e-110 403.7 384 62.5
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 8.2e-110 401.7 395 59.7
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 1.4e-109 401.0 395 58.7
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 4.1e-109 399.4 395 59.2
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 4.1e-109 399.4 385 59.7
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 5.3e-109 399.1 404 59.2
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 9.0e-109 398.3 394 56.6
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.0e-108 397.1 409 51.3
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 7.6e-108 395.2 394 57.9
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 7.6e-108 395.2 377 58.6
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 2.9e-107 393.3 383 52.5
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 8.5e-107 391.7 399 52.6
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 2.5e-106 390.2 371 61.7
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 5.5e-106 389.0 375 58.7
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 1.2e-105 387.9 375 58.7
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.6e-105 386.3 375 58.9
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 4.6e-105 386.0 375 58.9
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 7.9e-105 385.2 375 56.8
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 1.0e-104 384.8 375 58.7
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 6.7e-104 382.1 386 50.3
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 1.5e-103 380.9 375 58.4
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.9e-103 380.6 364 59.6
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.5e-103 380.2 445 53.7
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 9.7e-103 378.3 384 56.5
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.6e-102 377.5 386 50.3
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 3.1e-101 373.2 379 57.0
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 3.1e-101 373.2 376 57.4
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 4.1e-101 372.9 376 57.4
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 6.9e-101 372.1 376 57.2
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 5.9e-100 369.0 362 59.9
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 7.7e-100 368.6 462 46.5
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 7.2e-98 362.1 404 50.5
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 1.2e-97 361.3 412 54.1
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.4e-96 357.8 424 46.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.5e-95 354.4 402 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 7.9e-89 332.0 421 50.4
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.3e-86 324.7 392 49.7
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.7e-86 323.2 413 50.8
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 5.3e-85 319.3 408 50.7
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.3e-83 314.7 403 46.9
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 8.0e-81 305.4 352 56.5
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 6.8e-72 275.8 419 44.9
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 1.4e-69 268.1 361 49.9
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 2.0e-63 247.7 256 51.2
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 2.1e-57 227.6 426 33.1
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.8e-56 224.6 186 60.8
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 3.0e-51 207.2 430 39.8
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 5.2e-48 196.4 151 63.6
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 3.6e-41 173.7 402 31.8
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 3.1e-40 170.6 272 38.6
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 5.1e-35 153.3 251 37.5
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.1e-34 152.1 117 62.4
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.1e-24 119.0 361 26.0
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 9.0e-16 89.4 142 36.6
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 1.3e-14 85.5 114 41.2
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 2.2e-14 84.7 92 45.7
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.8e-14 84.0 84 48.8
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.0e-11 74.3 157 30.6
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.5e-10 71.2 156 32.1
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 1.5e-07 62.0 144 28.5
AagrBONN_evm.TU.Sc2ySwM_368.1648 Anthoceros agrestis HOM05D002943 ORTHO05D002685 2.0e-07 61.6 147 28.6
CDE07G1387 Ceratophyllum demersum HOM05D002288 ORTHO05D002894 2.2e-06 58.2 222 29.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.9e-06 57.8 142 29.6
Ah.15g095450 Amaranthus hybridus HOM05D000464 ORTHO05D006292 8.4e-06 56.2 217 24.0


User provided reference genes

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