Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 3.5e-299 1030.8 499 100.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 5.4e-268 927.2 496 89.5
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 6.1e-227 790.8 497 77.1
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 5.7e-225 784.3 501 73.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 3.7e-224 781.6 501 74.1
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 1.1e-223 780.0 499 75.4
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 1.4e-218 763.1 502 73.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 7.5e-217 757.3 502 72.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 1.3e-216 756.5 501 72.1
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 1.7e-216 756.1 501 71.7
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.4e-215 753.1 500 71.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 1.8e-215 752.7 501 71.5
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 7.7e-214 747.3 502 72.1
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 1.9e-212 742.7 500 70.8
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 8.0e-211 737.3 506 70.9
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 1.8e-210 736.1 502 70.5
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 6.8e-210 734.2 506 70.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 8.8e-210 733.8 506 70.8
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 3.8e-205 718.4 502 69.9
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 4.7e-203 711.4 501 66.9
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 6.8e-202 707.6 501 66.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 4.4e-201 704.9 501 67.5
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 1.7e-200 703.0 501 66.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 6.3e-200 701.0 501 66.7
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 6.3e-200 701.0 500 65.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 2.4e-199 699.1 501 66.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 7.0e-199 697.6 501 64.9
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 9.2e-199 697.2 500 67.6
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 3.5e-198 695.3 503 63.6
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 7.8e-198 694.1 501 66.7
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 8.6e-197 690.6 501 66.7
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 1.1e-196 690.3 501 64.9
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 5.6e-196 688.0 501 65.9
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 5.6e-196 688.0 502 66.9
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 2.8e-195 685.6 501 64.5
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 4.7e-195 684.9 502 63.9
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 1.0e-194 683.7 502 66.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 2.3e-194 682.6 502 63.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 4.0e-194 681.8 500 63.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 5.2e-194 681.4 501 65.5
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 6.8e-194 681.0 499 63.3
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 8.9e-194 680.6 504 62.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 1.2e-193 680.2 503 64.6
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 1.5e-193 679.9 503 64.4
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.0e-193 679.5 503 64.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 2.6e-193 679.1 499 63.5
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.5e-193 677.6 503 64.6
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 9.8e-193 677.2 501 64.1
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 1.3e-192 676.8 501 64.3
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 1.7e-192 676.4 501 65.1
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.7e-192 675.2 503 64.0
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 6.4e-192 674.5 501 64.9
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.3e-192 674.1 503 64.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 1.1e-191 673.7 502 65.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 2.4e-191 672.5 502 62.0
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 5.4e-191 671.4 500 64.8
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 2.0e-190 669.5 502 62.4
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 4.6e-190 668.3 502 63.3
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 7.8e-190 667.5 496 63.7
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 1.0e-189 667.2 501 63.7
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 1.3e-189 666.8 496 62.3
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.7e-189 666.4 500 61.8
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 2.3e-189 666.0 501 63.9
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.3e-189 666.0 501 63.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 3.0e-189 665.6 501 64.5
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 3.9e-189 665.2 502 63.5
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 5.0e-189 664.8 500 61.6
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 2.1e-187 659.4 502 63.1
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 2.8e-187 659.1 508 61.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 4.7e-187 658.3 501 62.7
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 6.2e-187 657.9 502 62.5
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 3.1e-186 655.6 502 62.5
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 5.2e-186 654.8 501 61.7
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 1.2e-185 653.7 502 62.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 1.5e-185 653.3 502 62.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.6e-185 652.5 500 61.6
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 8.3e-184 647.5 496 60.9
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 1.4e-183 646.7 500 60.6
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 1.4e-183 646.7 496 59.9
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 1.6e-182 643.3 501 61.1
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 9.5e-180 634.0 501 61.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 3.1e-178 629.0 501 60.1
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 3.4e-177 625.5 501 60.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 3.4e-177 625.5 501 60.9
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 9.9e-177 624.0 501 59.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 1.2e-174 617.1 501 59.3
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 8.6e-173 610.9 501 58.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 7.3e-172 607.8 504 59.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 1.2e-171 607.1 501 59.5
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 2.8e-171 605.9 503 59.0
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 1.1e-170 604.0 501 59.1
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 2.4e-170 602.8 503 58.6
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 2.4e-170 602.8 503 58.6
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.4e-170 602.8 503 59.0
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 5.8e-169 598.2 502 55.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 5.8e-169 598.2 502 55.0
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 5.1e-165 585.1 410 66.1
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.1e-165 585.1 499 56.1
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 8.7e-165 584.3 501 56.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 9.9e-161 570.9 501 55.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 2.2e-160 569.7 520 54.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 7.4e-148 528.1 396 65.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 4.2e-143 512.3 520 51.0
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.9e-135 486.9 505 52.9
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.6e-134 482.3 505 52.5
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 9.1e-122 441.4 321 66.4
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 8.8e-117 424.9 531 45.8
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 2.2e-115 420.2 406 51.7
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.7e-115 419.5 524 44.7
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.6e-113 413.3 519 45.1
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 7.2e-111 405.2 425 49.2
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.1e-106 389.8 523 42.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.7e-102 376.7 272 65.1
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 6.3e-99 365.5 260 65.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-96 357.8 254 65.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.7e-73 280.4 576 31.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.1e-54 217.6 167 58.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.8e-51 206.8 199 50.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.7e-43 181.4 244 47.1
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.1e-21 107.1 64 70.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.9e-10 71.6 95 40.0
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 9.4e-10 69.3 67 50.7
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.9e-08 63.9 189 31.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 6.7e-08 63.2 94 40.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 8.8e-08 62.8 195 31.3
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.6e-07 61.2 151 29.1
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.7e-07 60.1 135 29.6
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.4e-07 59.7 109 34.9
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 9.7e-07 59.3 96 36.5
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 3.7e-06 57.4 135 29.6
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-06 57.0 100 34.0


User provided reference genes

Program Settings