Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.0e-131 473.8 305 100.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 5.2e-112 408.3 283 96.1
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.9e-106 389.8 281 78.6
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 6.2e-105 384.8 281 83.6
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.2e-103 380.6 284 88.7
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-102 377.1 281 80.8
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.4e-102 374.8 281 72.6
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.1e-101 372.1 281 78.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 5.4e-101 371.7 282 71.3
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 6.0e-100 368.2 281 70.5
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.9e-98 363.2 281 86.5
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 6.2e-97 358.2 286 84.6
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.3e-96 356.3 286 76.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 6.4e-94 348.2 283 72.8
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 3.5e-92 342.4 284 85.2
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 8.6e-91 337.8 282 81.6
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.3e-90 335.9 282 81.2
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 3.3e-90 335.9 282 79.4
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 3.3e-90 335.9 282 82.3
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.2e-89 334.0 283 76.0
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 2.8e-89 332.8 282 72.7
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.8e-89 332.8 282 77.3
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 8.1e-89 331.3 286 75.9
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 8.1e-89 331.3 282 71.3
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.1e-89 331.3 290 75.5
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.1e-88 330.9 283 76.7
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.8e-88 330.1 290 64.8
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.3e-88 329.7 282 79.4
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.3e-88 329.7 283 69.3
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.0e-88 328.9 284 72.5
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 5.2e-88 328.6 283 72.1
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 5.2e-88 328.6 283 80.9
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 6.8e-88 328.2 281 71.9
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 2.0e-87 326.6 282 75.9
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 2.6e-87 326.2 283 75.3
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 9.9e-87 324.3 282 75.2
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.9e-86 322.8 282 77.0
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 8.4e-86 321.2 282 81.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-85 320.9 283 72.4
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.1e-85 320.9 283 72.4
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.4e-85 319.7 283 73.9
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.4e-85 318.5 283 72.1
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.4e-85 318.5 282 70.9
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.2e-84 317.4 283 71.7
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 2.7e-84 316.2 283 75.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.5e-84 315.8 284 73.2
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 3.5e-84 315.8 281 70.8
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.7e-83 313.5 284 76.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.9e-82 310.1 302 72.5
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 2.1e-81 306.6 286 71.7
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.8e-80 303.5 288 60.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 4.0e-80 302.4 284 65.8
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 5.2e-80 302.0 284 76.4
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 8.9e-80 301.2 281 71.2
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.5e-79 300.4 283 68.6
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.5e-79 300.4 284 77.8
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.6e-79 299.7 281 68.0
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 4.4e-79 298.9 290 67.6
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 4.4e-79 298.9 286 62.2
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 9.9e-79 297.7 290 67.2
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-78 297.4 290 67.2
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.3e-78 297.4 283 68.6
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 6.4e-78 295.0 287 66.9
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.4e-77 293.9 285 65.3
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.4e-77 293.1 286 63.3
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.2e-77 292.4 290 70.7
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.6e-76 288.9 283 65.7
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 6.0e-76 288.5 282 68.1
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 4.3e-74 282.3 282 59.2
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-73 280.0 290 64.5
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.8e-72 276.9 281 63.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.4e-72 276.6 281 63.7
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 6.9e-72 275.0 285 57.9
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 9.0e-72 274.6 280 59.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.3e-70 270.8 281 63.3
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.2e-69 265.8 286 71.3
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.2e-69 265.8 285 70.5
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 7.1e-69 265.0 281 61.6
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 9.3e-69 264.6 286 66.8
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.3e-69 264.6 285 67.0
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 1.2e-68 264.2 194 73.7
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-68 263.8 286 63.6
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.5e-68 262.7 194 72.7
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 3.9e-67 259.2 291 67.7
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 4.3e-66 255.8 283 52.7
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 4.3e-66 255.8 282 53.2
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 7.4e-66 255.0 280 61.1
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.1e-64 251.1 282 52.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.4e-64 250.8 306 55.6
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.4e-64 250.0 187 72.2
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 5.3e-64 248.8 286 61.2
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.9e-64 248.4 282 52.1
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 9.0e-64 248.1 282 51.8
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.2e-63 247.7 190 72.1
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 2.6e-63 246.5 283 51.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-62 243.4 194 68.6
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 3.8e-62 242.7 194 68.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 4.9e-62 242.3 194 67.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.4e-62 241.9 281 50.9
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 8.4e-62 241.5 283 52.7
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 4.2e-61 239.2 287 50.2
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 7.1e-61 238.4 286 50.3
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.7e-60 236.5 194 66.0
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.3e-59 234.2 287 63.4
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.5e-58 229.9 304 53.3
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 1.1e-50 204.5 282 55.7
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.9e-50 203.8 288 46.9
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.3e-50 203.0 281 46.3
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.5e-47 192.6 284 45.8
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 3.8e-46 189.5 180 61.7
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 6.1e-44 182.2 281 44.8
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.8e-43 180.6 179 59.2
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 5.1e-43 179.1 286 46.9
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-41 174.5 260 45.0
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 8.2e-41 171.8 332 49.4
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.4e-40 171.0 282 46.1
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.2e-36 157.9 284 50.0
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.1e-36 157.1 155 58.1
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 2.6e-34 150.2 86 84.9
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.8e-32 144.1 196 50.0
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.7e-28 130.2 156 59.6
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.7e-28 130.2 176 44.9
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.7e-25 120.9 72 81.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 7.0e-24 115.5 73 78.1
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 7.7e-23 112.1 66 81.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.0e-22 111.7 66 81.8
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 4.2e-21 106.3 138 59.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.7e-20 103.6 159 42.8
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 9.1e-16 88.6 66 66.7
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.0e-11 75.1 41 92.7
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.0e-11 75.1 53 69.8
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.3e-11 73.9 36 97.2
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.3e-11 73.9 36 97.2
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.3e-11 73.9 62 66.1
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.8e-11 72.4 36 94.4
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.8e-11 72.0 36 94.4
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.3e-09 68.2 74 50.0
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.3e-09 68.2 74 50.0
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.7e-09 67.8 36 86.1
Actinidia10913 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.4e-08 62.8 37 83.8


User provided reference genes

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