Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 7.7e-272 939.9 472 100.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 6.3e-165 584.7 613 55.1
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.4e-164 583.6 613 54.0
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 5.3e-164 581.6 641 53.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.2e-163 580.5 634 53.8
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.4e-161 573.5 559 56.5
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.2e-161 572.4 599 53.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.2e-161 572.4 620 53.2
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 9.4e-161 570.9 645 52.2
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 9.4e-161 570.9 631 52.3
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.6e-160 570.1 638 53.6
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 2.3e-159 566.2 645 50.7
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.5e-158 563.5 624 52.9
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.3e-158 562.4 603 52.7
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 5.7e-158 561.6 606 52.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.7e-157 560.1 601 53.2
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.1e-156 557.4 589 54.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 9.1e-156 554.3 584 53.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.0e-155 553.1 623 52.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 4.5e-155 552.0 605 51.6
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.0e-154 550.8 645 51.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 5.0e-154 548.5 602 51.5
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.4e-153 547.0 622 51.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.4e-153 547.0 622 51.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 3.2e-153 545.8 627 50.9
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.2e-153 545.4 605 51.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.1e-152 543.1 622 51.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.7e-152 542.7 617 51.4
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.0e-151 540.8 628 50.8
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.0e-151 540.8 626 51.6
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.0e-151 540.8 632 49.4
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.4e-151 540.4 636 50.9
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 5.2e-151 538.5 629 49.6
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 5.2e-151 538.5 625 49.6
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 8.8e-151 537.7 636 50.0
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 3.3e-150 535.8 636 50.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.3e-150 535.8 635 50.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 4.4e-150 535.4 627 51.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 7.4e-150 534.6 624 49.5
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 9.7e-150 534.3 637 50.1
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.3e-149 533.9 630 49.8
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.8e-149 532.7 648 49.1
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.7e-149 532.3 604 51.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 6.3e-149 531.6 603 51.7
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.8e-148 530.0 603 51.7
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 3.1e-148 529.3 630 48.4
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 4.1e-148 528.9 604 51.5
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.3e-148 528.5 601 51.6
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.6e-147 526.2 633 50.4
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.5e-147 525.4 646 48.5
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.9e-147 525.0 621 51.4
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.0e-146 524.2 625 49.4
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.0e-146 524.2 619 51.2
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-146 523.9 633 49.1
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.7e-146 523.5 609 50.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.2e-146 523.1 639 48.5
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.2e-146 523.1 611 50.9
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-146 522.7 620 49.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 8.5e-146 521.2 595 50.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.5e-146 521.2 620 49.0
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.5e-145 520.4 646 46.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.9e-145 520.0 629 48.3
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.9e-145 520.0 626 48.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.5e-145 519.6 636 49.1
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.2e-145 519.2 586 51.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.2e-145 519.2 620 48.5
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 9.4e-145 517.7 594 50.0
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.2e-144 517.3 620 48.9
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-144 517.3 620 48.9
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.2e-144 517.3 640 48.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.6e-144 516.9 604 49.5
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 3.6e-144 515.8 617 48.9
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 3.6e-144 515.8 594 49.8
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.6e-144 515.8 653 48.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-143 513.1 614 49.8
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.3e-143 513.1 588 50.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 5.2e-143 511.9 623 48.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.2e-142 510.8 583 50.3
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-142 510.4 626 49.5
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-142 510.4 588 49.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.5e-142 510.4 588 49.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.6e-142 509.6 617 48.9
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.3e-142 509.2 604 48.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 4.4e-142 508.8 629 47.7
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 5.7e-142 508.4 565 51.9
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.7e-141 506.9 646 46.4
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.8e-141 505.4 646 46.6
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.8e-140 503.4 610 48.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.8e-140 503.4 610 48.4
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 3.1e-140 502.7 592 49.3
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 9.1e-140 501.1 614 49.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.0e-139 500.0 607 47.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.2e-138 496.5 625 47.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.5e-137 493.8 605 47.3
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.5e-137 493.8 582 50.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.1e-136 490.0 591 48.4
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.1e-136 490.0 641 44.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 5.2e-135 485.3 644 45.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.6e-134 483.0 578 48.4
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 7.5e-134 481.5 591 47.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 3.7e-133 479.2 627 47.4
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.4e-132 477.2 584 46.9
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.4e-127 460.7 536 48.1
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-124 449.9 549 47.4
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 9.2e-124 448.0 536 46.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 2.0e-123 446.8 578 45.7
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.3e-119 433.3 513 51.1
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.7e-117 427.2 509 50.9
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 6.4e-117 425.2 519 48.2
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.4e-116 423.3 636 41.8
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.9e-113 413.7 667 38.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 9.5e-113 411.4 623 43.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.7e-112 409.1 492 48.6
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 5.4e-108 395.6 524 45.4
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 8.9e-103 378.3 546 42.9
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.2e-102 377.9 466 48.1
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-95 354.8 280 66.8
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 3.1e-95 353.2 434 47.5
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.6e-94 350.1 281 67.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 7.3e-89 332.0 230 73.9
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 6.4e-85 318.9 522 39.5
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.3e-82 311.2 490 42.7
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 8.7e-82 308.5 254 63.8
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.1e-80 303.9 653 34.2
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 6.2e-80 302.4 647 34.2
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.4e-79 301.2 254 63.0
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.1e-72 277.3 242 61.2
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-70 271.6 419 43.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.0e-61 241.9 275 49.5
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.2e-60 236.9 394 38.8
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 6.9e-55 219.2 156 69.2
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.0e-53 215.3 533 32.1
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 8.5e-53 212.2 232 51.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.6e-51 206.5 211 52.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.6e-51 206.5 211 52.6
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.4e-46 190.3 478 32.0
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 9.4e-44 182.2 780 24.4
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.6e-43 181.4 129 65.1
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.6e-43 180.3 175 53.1
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 7.9e-43 179.1 175 53.1
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.3e-42 177.6 175 52.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 3.3e-41 173.7 152 58.6
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.8e-39 167.9 474 28.9
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.2e-35 155.2 518 28.4
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.3e-34 151.0 184 46.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 9.1e-31 139.0 89 78.7
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.7e-21 108.2 60 81.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.2e-20 104.0 79 68.4
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.2e-20 104.0 265 34.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 3.3e-12 77.4 90 51.1
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 3.4e-09 67.4 40 80.0
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 4.4e-09 67.0 74 55.4
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 5.7e-09 66.6 46 71.7
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 2.7e-06 57.8 56 60.7
SGA_v2.0_scaffold48G18055 Striga asiatica HOM05D000936 ORTHO05D399589 7.8e-06 56.2 75 49.3


User provided reference genes

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