Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39799 Nelumbo nucifera HOM05D000280 ORTHO05D003998 8.6e-66 253.4 122 100.0
Nn2g11739 Nelumbo nucifera HOM05D000280 ORTHO05D003998 7.9e-11 70.9 39 89.7
Cpa.g.sc9.120 Carica papaya HOM05D000280 ORTHO05D003998 3.0e-10 68.9 35 97.1
TAR636G2522 Trochodendron aralioides HOM05D000280 ORTHO05D003998 3.9e-10 68.6 35 94.3
Glyma.03G150600 Glycine max HOM05D000280 ORTHO05D003998 6.7e-10 67.8 35 94.3
Glyma.19G153200 Glycine max HOM05D000280 ORTHO05D003998 6.7e-10 67.8 35 94.3
Dinv32967 Davidia involucrata HOM05D000280 ORTHO05D003998 8.7e-10 67.4 35 91.4
Rhsim13G0022100 Rhododendron simsii HOM05D000280 ORTHO05D003998 8.7e-10 67.4 35 91.4
vmacro02545 Vaccinium macrocarpon HOM05D000280 ORTHO05D003998 8.7e-10 67.4 35 91.4
VMungo1383G2172 Vigna mungo HOM05D000280 ORTHO05D003998 8.7e-10 67.4 35 91.4
Cc01_g19830 Coffea canephora HOM05D000280 ORTHO05D003998 1.1e-09 67.0 35 94.3
HPP92_025317 Vanilla planifolia HOM05D000280 ORTHO05D003998 1.1e-09 67.0 35 88.6
Actinidia00728 Actinidia chinensis HOM05D000280 ORTHO05D003998 1.5e-09 66.6 35 91.4
Lj6A664T63 Lonicera japonica HOM05D000280 ORTHO05D003998 1.5e-09 66.6 35 91.4
Lalb_Chr01g0020241 Lupinus albus HOM05D000280 ORTHO05D003998 1.5e-09 66.6 35 91.4
Rhsim02G0018200 Rhododendron simsii HOM05D000280 ORTHO05D003998 1.5e-09 66.6 35 88.6
arahy.Tifrunner.gnm1.ann1.37CK0J Arachis hypogaea HOM05D000280 ORTHO05D003998 1.9e-09 66.2 34 94.1
CDE05G3568 Ceratophyllum demersum HOM05D000280 ORTHO05D003998 2.5e-09 65.9 34 94.1
CDE07G1229 Ceratophyllum demersum HOM05D000280 ORTHO05D003998 2.5e-09 65.9 34 94.1
Hma1.2p1_0257F.1_g103840 Hydrangea macrophylla HOM05D000280 ORTHO05D003998 2.5e-09 65.9 35 85.7
Aqoxy2G03229 Aquilegia oxysepala HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 88.6
CSS0001241 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 88.6
MBI17_g34955_MAGBIO Magnolia biondii HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 88.6
Phvul.001G148200 Phaseolus vulgaris HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 88.6
QL12p022891 Quercus lobata HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 88.6
Thecc.01G284600 Theobroma cacao HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 91.4
vmacro15294 Vaccinium macrocarpon HOM05D000280 ORTHO05D003998 3.3e-09 65.5 35 88.6
Cfa006096 Carpinus fangiana HOM05D000280 ORTHO05D003998 4.3e-09 65.1 34 91.2
CiPaw.07G095200 Carya illinoinensis HOM05D000280 ORTHO05D003998 4.3e-09 65.1 34 91.2
Haze_04758 Corylus avellana HOM05D000280 ORTHO05D003998 4.3e-09 65.1 34 91.2
Eucgr.H01524 Eucalyptus grandis HOM05D000280 ORTHO05D003998 4.3e-09 65.1 35 88.6
Manes.01G210600 Manihot esculenta HOM05D000280 ORTHO05D003998 4.3e-09 65.1 35 88.6
Nn8g39176 Nelumbo nucifera HOM05D000280 ORTHO05D003998 4.3e-09 65.1 35 91.4
Peaxi162Scf00161g00144 Petunia axillaris HOM05D000280 ORTHO05D003998 4.3e-09 65.1 35 88.6
Sed0014932 Sechium edule HOM05D000280 ORTHO05D003998 4.3e-09 65.1 53 62.3
Ah.10g033730 Amaranthus hybridus HOM05D000280 ORTHO05D003998 5.6e-09 64.7 34 91.2
Aqoxy5G00543 Aquilegia oxysepala HOM05D000280 ORTHO05D003998 5.6e-09 64.7 34 88.2
MSTRG.18211 Avicennia marina HOM05D000280 ORTHO05D003998 5.6e-09 64.7 35 91.4
EL10Ac2g03731 Beta vulgaris HOM05D000280 ORTHO05D003998 5.6e-09 64.7 34 91.2
Hund03281 Selenicereus undatus HOM05D000280 ORTHO05D003998 5.6e-09 64.7 34 91.2
Sc24g0004080 Simmondsia chinensis HOM05D000280 ORTHO05D003998 5.6e-09 64.7 34 91.2
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 5.6e-09 64.7 35 91.4
unitig_61.g26149 Utricularia gibba HOM05D000280 ORTHO05D003998 5.6e-09 64.7 35 91.4
Ca_08560_v3 Cicer arietinum L. HOM05D000280 ORTHO05D003998 7.4e-09 64.3 35 88.6
Ca_08594_v3 Cicer arietinum L. HOM05D000280 ORTHO05D003998 7.4e-09 64.3 35 88.6
Dinv38367 Davidia involucrata HOM05D000280 ORTHO05D003998 7.4e-09 64.3 35 85.7
Lj2C1179G13 Lonicera japonica HOM05D000280 ORTHO05D003998 7.4e-09 64.3 35 85.7
Lalb_Chr15g0087291 Lupinus albus HOM05D000280 ORTHO05D003998 7.4e-09 64.3 38 76.3
Lalb_Chr20g0107741 Lupinus albus HOM05D000280 ORTHO05D003998 7.4e-09 64.3 35 88.6
GSVIVG01011073001 Vitis vinifera HOM05D000280 ORTHO05D003998 7.4e-09 64.3 35 88.6
ATR0626G081 Amborella trichopoda HOM05D000280 ORTHO05D003998 9.6e-09 63.9 34 88.2
CiPaw.08G102800 Carya illinoinensis HOM05D000280 ORTHO05D003998 9.6e-09 63.9 34 88.2
DCAR_030588 Daucus carota HOM05D000280 ORTHO05D003998 9.6e-09 63.9 34 91.2
Nitab4.5_0001323g0040 Nicotiana tabacum HOM05D000280 ORTHO05D003998 9.6e-09 63.9 35 85.7
Nitab4.5_0008204g0050 Nicotiana tabacum HOM05D000280 ORTHO05D003998 9.6e-09 63.9 35 85.7
Peaxi162Scf00777g00213 Petunia axillaris HOM05D000280 ORTHO05D003998 9.6e-09 63.9 35 85.7
arahy.Tifrunner.gnm1.ann1.EF2YWP Arachis hypogaea HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 91.2
MSTRG.21580 Avicennia marina HOM05D000280 ORTHO05D003998 1.3e-08 63.5 35 88.6
CANSAT25G3248 Cannabis sativa HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 88.2
Migut.D00257 Erythranthe guttata HOM05D000280 ORTHO05D003998 1.3e-08 63.5 35 88.6
MD03G1270100 Malus domestica HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 88.2
MD11G1290900 Malus domestica HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 88.2
SalBow4G2625 Salvia bowleyana HOM05D000280 ORTHO05D003998 1.3e-08 63.5 35 88.6
Solyc09g073000.3 Solanum lycopersicum HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 88.2
Sopen09g028810 Solanum pennellii HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 88.2
PGSC0003DMG400003838 Solanum tuberosum HOM05D000280 ORTHO05D003998 1.3e-08 63.5 34 88.2
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 1.3e-08 63.5 35 88.6
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 1.3e-08 63.5 35 88.6
AL1G12860 Arabidopsis lyrata HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 91.2
AL6G50000 Arabidopsis lyrata HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 88.2
AT4G02930 Arabidopsis thaliana HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 88.2
Carub.0001s0246 Capsella rubella HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 91.2
Carub.0006s3415 Capsella rubella HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 88.2
CARHR251300 Cardamine hirsuta HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 88.2
Thhalv10028651m.g Eutrema salsugineum HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 88.2
Medtr7g094460 Medicago truncatula HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 91.2
Oeu001438.1 Olea europaea HOM05D000280 ORTHO05D003998 1.6e-08 63.2 35 88.6
PSO210G6369 Papaver somniferum HOM05D000280 ORTHO05D003998 1.6e-08 63.2 35 85.7
PSO832G1708 Papaver somniferum HOM05D000280 ORTHO05D003998 1.6e-08 63.2 35 85.7
Prupe.8G246000 Prunus persica HOM05D000280 ORTHO05D003998 1.6e-08 63.2 35 85.7
Sp6g02960 Schrenkiella parvula HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 88.2
THA.LOC104801215 Tarenaya hassleriana HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 91.2
THA.LOC104826002 Tarenaya hassleriana HOM05D000280 ORTHO05D003998 1.6e-08 63.2 34 91.2
Atru.chr5.1351 Acer truncatum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
Actinidia00079 Actinidia chinensis HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 80.0
CAN.G1006.18 Capsicum annuum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 82.9
CARHR002710 Cardamine hirsuta HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
DCAR_002422 Daucus carota HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
DCAR_002757 Daucus carota HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 85.7
Thhalv10007606m.g Eutrema salsugineum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
Manes.05G072900 Manihot esculenta HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 85.7
Nitab4.5_0000295g0150 Nicotiana tabacum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 82.9
Nitab4.5_0006390g0030 Nicotiana tabacum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 82.9
Psat3g065800 Pisum sativum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
Potri.014G138100 Populus trichocarpa HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
Sabra02G0168200 Salix brachista HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
Sabra14G0104200 Salix brachista HOM05D000280 ORTHO05D003998 2.1e-08 62.8 34 88.2
Solyc06g008940.4 Solanum lycopersicum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 82.9
Sopen06g003690 Solanum pennellii HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 82.9
PGSC0003DMG400014624 Solanum tuberosum HOM05D000280 ORTHO05D003998 2.1e-08 62.8 35 82.9
CAN.G1807.3 Capsicum annuum HOM05D000280 ORTHO05D003998 2.8e-08 62.4 34 85.3
CAN.G956.1 Capsicum annuum HOM05D000280 ORTHO05D003998 2.8e-08 62.4 34 85.3
Duzib138G0117 Durio zibethinus HOM05D000280 ORTHO05D003998 2.8e-08 62.4 35 85.7
Gohir.A12G006500 Gossypium hirsutum HOM05D000280 ORTHO05D003998 2.8e-08 62.4 35 85.7
Gohir.D12G005900 Gossypium hirsutum HOM05D000280 ORTHO05D003998 2.8e-08 62.4 35 85.7
Gorai.008G005900 Gossypium raimondii HOM05D000280 ORTHO05D003998 2.8e-08 62.4 35 85.7
Potri.002G215900 Populus trichocarpa HOM05D000280 ORTHO05D003998 2.8e-08 62.4 34 85.3
BcaC04g24022 Brassica carinata HOM05D000280 ORTHO05D003998 3.7e-08 62.0 34 85.3
BolC9t53166H Brassica oleracea HOM05D000280 ORTHO05D003998 3.7e-08 62.0 34 85.3
DCAR_005822 Daucus carota HOM05D000280 ORTHO05D003998 3.7e-08 62.0 35 80.0
Glyma.13G210600 Glycine max HOM05D000280 ORTHO05D003998 3.7e-08 62.0 34 88.2
Glyma.15G102252 Glycine max HOM05D000280 ORTHO05D003998 3.7e-08 62.0 34 88.2
Lj1A43T59 Lonicera japonica HOM05D000280 ORTHO05D003998 3.7e-08 62.0 35 82.9
Oeu011174.1 Olea europaea HOM05D000280 ORTHO05D003998 3.7e-08 62.0 35 85.7
Ah.11g043690 Amaranthus hybridus HOM05D002728 ORTHO05D002874 4.8e-08 61.6 34 85.3
arahy.Tifrunner.gnm1.ann1.K4GSHL Arachis hypogaea HOM05D000280 ORTHO05D003998 4.8e-08 61.6 35 82.9
arahy.Tifrunner.gnm1.ann1.W41LIU Arachis hypogaea HOM05D000280 ORTHO05D003998 4.8e-08 61.6 35 82.9
ClCG09G006820 Citrullus lanatus HOM05D000280 ORTHO05D003998 4.8e-08 61.6 35 85.7
Phvul.006G155600 Phaseolus vulgaris HOM05D000280 ORTHO05D003998 4.8e-08 61.6 37 78.4
SEGI_20288 Sequoiadendron giganteum HOM05D000280 ORTHO05D003998 4.8e-08 61.6 34 88.2
TPR.G32801 Trifolium pratense HOM05D000280 ORTHO05D003998 4.8e-08 61.6 34 85.3
AagrBONN_evm.TU.Sc2ySwM_117.3885 Anthoceros agrestis HOM05D000280 ORTHO05D003998 6.2e-08 61.2 34 85.3
CAN.G134.79 Capsicum annuum HOM05D000280 ORTHO05D003998 6.2e-08 61.2 34 82.4
FvH4_2g24070 Fragaria vesca HOM05D000280 ORTHO05D003998 6.2e-08 61.2 35 82.9
FAN15G3130 Fragaria x ananassa HOM05D000280 ORTHO05D003998 6.2e-08 61.2 35 82.9
FAN24G2240 Fragaria x ananassa HOM05D000280 ORTHO05D003998 6.2e-08 61.2 35 82.9
FAN27G0360 Fragaria x ananassa HOM05D000280 ORTHO05D003998 6.2e-08 61.2 35 82.9
TWI59G0558 Tripterygium wilfordii HOM05D000280 ORTHO05D003998 6.2e-08 61.2 34 85.3
QL06p005873 Quercus lobata HOM05D000280 ORTHO05D003998 8.1e-08 60.8 35 80.0
Sp1g02340 Schrenkiella parvula HOM05D000280 ORTHO05D003998 8.1e-08 60.8 34 85.3
C08p06840 Brassica napus HOM05D000280 ORTHO05D003998 1.1e-07 60.5 35 80.0
Lj1g0007555 Lotus japonicus HOM05D000280 ORTHO05D003998 1.1e-07 60.5 34 82.4
PGR044G0952 Punica granatum HOM05D000280 ORTHO05D003998 1.1e-07 60.5 34 85.3
VMungo0540G2017 Vigna mungo HOM05D000280 ORTHO05D003998 1.1e-07 60.5 34 82.4
BcaB01g01997 Brassica carinata HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
BcaB01g02488 Brassica carinata HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
BcaB01g02492 Brassica carinata HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
AUR62009044 Chenopodium quinoa HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
AUR62020618 Chenopodium quinoa HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
AUR62038764 Chenopodium quinoa HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
Ca_00610_v3 Cicer arietinum L. HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
Psat1g184840 Pisum sativum HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
RcHm_v2.0_Chr6g0291851 Rosa chinensis HOM05D000280 ORTHO05D003998 1.4e-07 60.1 35 82.9
TPR.G28920 Trifolium pratense HOM05D000280 ORTHO05D003998 1.4e-07 60.1 34 82.4
A09p02250 Brassica napus HOM05D000280 ORTHO05D003998 1.8e-07 59.7 34 82.4
BraA09t35874Z Brassica rapa HOM05D000280 ORTHO05D003998 1.8e-07 59.7 34 82.4
ECA236G0754 Erigeron canadensis HOM05D000321 ORTHO05D000204 2.4e-07 59.3 34 85.3
Mapoly0153s0015 Marchantia polymorpha HOM05D000280 ORTHO05D003998 2.4e-07 59.3 35 71.4
Sc05g0005090 Simmondsia chinensis HOM05D000280 ORTHO05D003998 2.4e-07 59.3 34 82.4
Aa31LG5G2510 Aethionema arabicum HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 82.4
BcaB01g02491 Brassica carinata HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
BcaC01g06722 Brassica carinata HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
A03p30720 Brassica napus HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
C03p37420 Brassica napus HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
C09p02350 Brassica napus HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
BolC3t16034H Brassica oleracea HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
BraA03t12251Z Brassica rapa HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 79.4
CsaV3_7G028550 Cucumis sativus L. HOM05D000280 ORTHO05D003998 3.1e-07 58.9 34 82.4
Sed0007790 Sechium edule HOM05D000280 ORTHO05D003998 3.1e-07 58.9 35 80.0
BolC8t47526H Brassica oleracea HOM05D000280 ORTHO05D003998 4.0e-07 58.5 35 77.1
MELO3C015864.2 Cucumis melo HOM05D000280 ORTHO05D003998 4.0e-07 58.5 34 79.4
FAN20G0293 Fragaria x ananassa HOM05D000280 ORTHO05D003998 4.0e-07 58.5 34 79.4
TWI14G0121 Tripterygium wilfordii HOM05D000280 ORTHO05D003998 4.0e-07 58.5 35 77.1
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 5.3e-07 58.2 34 79.4
BcaC07g37254 Brassica carinata HOM05D000280 ORTHO05D003998 5.3e-07 58.2 34 79.4
ECA248G2882 Erigeron canadensis HOM05D000280 ORTHO05D003998 5.3e-07 58.2 34 82.4
HanXRQChr01g0002451 Helianthus annuus HOM05D000280 ORTHO05D003998 9.0e-07 57.4 34 82.4
HanXRQChr02g0046671 Helianthus annuus HOM05D000280 ORTHO05D003998 9.0e-07 57.4 34 82.4
Lsat_1_v5_gn_5_187560 Lactuca sativa HOM05D000280 ORTHO05D003998 9.0e-07 57.4 34 82.4
Lj6g0018717 Lotus japonicus HOM05D000280 ORTHO05D003998 9.0e-07 57.4 34 76.5
Cc03_g02960 Coffea canephora HOM05D000280 ORTHO05D003998 1.2e-06 57.0 34 79.4
GSVIVG01022922001 Vitis vinifera HOM05D000280 ORTHO05D003998 1.5e-06 56.6 35 80.0
Pp3c20_17410 Physcomitrium patens HOM05D000280 ORTHO05D003998 3.4e-06 55.5 34 76.5
Pp3c23_5580 Physcomitrium patens HOM05D000280 ORTHO05D003998 3.4e-06 55.5 34 76.5
Os03g0851100 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D003998 4.5e-06 55.1 34 79.4
Pp3c21_1500 Physcomitrium patens HOM05D000280 ORTHO05D003998 7.6e-06 54.3 34 73.5
Medtr2g021300 Medicago truncatula HOM05D000280 ORTHO05D003998 1.0e-05 53.9 34 70.6
SalBow6G2887 Salvia bowleyana HOM05D000280 ORTHO05D003998 1.0e-05 53.9 34 73.5
Zm00001eb210740 Zea mays HOM05D000280 ORTHO05D003998 1.0e-05 53.9 52 55.8


User provided reference genes

Program Settings