Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 0.0e+00 1227.2 624 100.0
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 0.0e+00 1172.9 625 95.8
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.3e-247 859.0 631 71.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.5e-243 846.3 611 72.7
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.3e-223 780.0 626 66.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.5e-222 776.5 630 66.2
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.0e-218 763.8 631 66.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 6.5e-218 761.1 635 65.0
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.1e-217 760.4 629 65.7
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.3e-215 752.7 632 65.3
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 3.3e-214 748.8 631 64.5
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.2e-213 746.1 628 64.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.1e-212 741.9 627 64.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-211 739.6 629 64.9
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.6e-211 739.2 625 63.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 5.9e-211 738.0 633 63.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.9e-210 735.7 633 63.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 6.5e-210 734.6 630 64.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.1e-209 733.8 631 64.2
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.4e-209 733.4 651 62.8
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.6e-208 729.9 629 63.0
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.6e-208 728.4 634 62.1
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 7.9e-208 727.6 628 62.1
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.8e-207 726.5 621 62.0
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 5.1e-207 724.9 627 62.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.5e-206 722.6 626 63.7
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.3e-206 722.2 625 62.9
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.3e-206 722.2 634 62.5
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 5.7e-206 721.5 635 62.5
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.7e-205 719.9 630 62.2
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.8e-204 716.5 623 62.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 4.1e-204 715.3 626 62.6
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 3.4e-203 712.2 609 63.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 5.9e-203 711.4 594 63.1
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.0e-202 710.7 631 61.0
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.7e-202 709.9 595 63.4
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.8e-202 708.8 593 63.4
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 8.5e-202 707.6 625 61.1
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.1e-201 707.2 630 61.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.4e-201 706.8 630 61.6
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.1e-200 703.0 623 61.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 5.1e-199 698.4 628 61.5
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.4e-198 695.3 625 60.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.4e-198 695.3 628 59.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.7e-197 692.2 629 60.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.2e-197 691.0 629 60.7
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.8e-196 689.9 630 60.8
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.8e-196 689.9 630 57.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.1e-196 688.7 632 60.0
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-195 686.8 621 58.9
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-195 686.8 621 58.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-195 686.4 629 60.4
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.6e-195 686.0 632 59.7
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.6e-195 686.0 632 59.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.5e-195 685.6 640 58.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.0e-194 684.1 629 59.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-194 682.9 627 60.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.2e-194 682.9 628 58.6
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.9e-194 682.6 595 60.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.0e-194 681.8 629 59.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.4e-193 680.2 623 58.3
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.9e-193 679.9 596 60.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.5e-193 679.5 640 59.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 3.2e-193 679.1 634 59.0
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 4.2e-193 678.7 632 58.7
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-192 677.2 635 57.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.6e-192 676.8 633 57.8
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.6e-192 676.8 596 60.1
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.7e-192 675.2 635 58.9
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.3e-191 672.9 638 59.9
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.7e-189 666.8 621 58.8
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 4.8e-189 665.2 629 58.3
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 4.8e-189 665.2 636 57.7
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.4e-188 663.7 623 57.3
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.8e-188 663.3 621 58.3
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.6e-187 660.2 635 59.8
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.6e-187 659.4 619 59.6
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.9e-186 656.0 623 58.6
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.8e-186 655.6 625 58.7
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.5e-185 653.7 624 59.1
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.9e-185 653.3 631 57.4
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 4.2e-185 652.1 621 57.3
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.2e-182 644.0 623 57.5
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.6e-182 642.9 637 55.7
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.4e-182 642.1 637 56.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.3e-181 640.6 600 57.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.1e-180 637.5 641 56.3
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.1e-177 627.5 628 57.6
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 3.2e-177 625.9 625 57.0
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 3.6e-176 622.5 632 53.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.1e-176 621.7 630 54.8
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.1e-176 621.7 630 54.8
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 7.5e-174 614.8 633 54.8
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.3e-173 614.0 631 55.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-173 613.6 631 55.0
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 2.2e-173 613.2 633 54.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 2.2e-173 613.2 633 54.7
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.6e-170 601.7 561 59.0
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 8.6e-170 601.3 632 53.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 3.3e-169 599.4 632 53.6
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 3.6e-168 595.9 629 53.9
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 6.1e-168 595.1 627 54.4
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.3e-165 587.4 523 60.4
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 5.0e-162 575.5 541 59.0
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.6e-158 563.1 545 56.5
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.2e-155 554.3 625 50.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-154 549.3 630 51.0
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 3.3e-153 546.2 671 47.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.6e-152 543.9 531 55.2
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 9.8e-150 534.6 599 50.3
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.3e-146 523.5 624 48.1
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 5.1e-146 522.3 648 48.9
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 8.6e-146 521.5 639 48.5
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 7.8e-139 498.4 631 47.9
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 8.9e-135 485.0 476 57.6
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.6e-134 483.4 636 46.1
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.3e-128 464.5 480 55.4
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 7.9e-123 445.3 526 48.7
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.5e-110 404.4 670 40.9
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 3.4e-110 403.3 534 47.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 7.6e-110 402.1 550 47.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-108 397.9 399 57.1
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.3e-104 384.8 447 51.7
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-98 364.4 336 61.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.5e-97 361.3 666 37.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.3e-93 348.2 459 47.7
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-92 345.1 436 48.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 7.7e-86 322.4 242 71.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 7.7e-86 322.4 622 36.0
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.7e-81 306.2 382 48.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-80 305.1 382 48.4
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.7e-80 304.7 281 58.4
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.0e-69 268.9 254 57.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.2e-67 261.9 572 35.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.6e-65 254.2 345 46.1
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 4.4e-65 253.4 457 39.6
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 5.4e-63 246.5 457 39.2
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.5e-61 239.6 769 29.3
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-58 231.1 148 71.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-57 228.8 203 58.1
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 3.1e-42 177.6 153 60.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.0e-38 164.9 177 51.4
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.7e-38 164.5 544 28.5
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.3e-37 162.2 592 26.9
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.6e-35 155.2 536 28.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 2.2e-32 144.8 411 32.8
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 5.2e-26 123.6 264 37.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.5e-22 110.9 60 81.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 4.4e-17 94.0 83 61.4
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 6.4e-16 90.1 79 57.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 7.8e-14 83.2 71 64.8
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.7e-13 82.0 214 32.2
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 4.9e-08 63.9 56 60.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.4e-07 62.4 59 59.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 1.6e-06 58.9 32 81.2


User provided reference genes

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