Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 1.2e-275 952.6 489 100.0
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 9.8e-113 411.4 533 47.7
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 2.1e-94 350.5 458 46.7
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 3.9e-85 319.7 450 44.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 2.5e-84 317.0 496 41.7
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 6.9e-82 308.9 466 42.3
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 1.2e-81 308.1 449 43.2
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.0e-81 307.4 449 43.2
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 4.5e-81 306.2 479 41.3
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.7e-80 304.3 500 40.6
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 2.9e-80 303.5 503 41.7
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 4.6e-78 296.2 474 42.6
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.5e-76 291.2 489 40.7
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 3.3e-76 290.0 453 40.4
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 2.1e-75 287.3 474 41.8
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 1.1e-74 285.0 462 39.8
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 2.3e-69 267.3 582 36.1
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 3.0e-69 266.9 430 40.2
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.5e-68 264.6 578 34.3
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 4.8e-67 259.6 501 37.5
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 6.3e-67 259.2 477 41.3
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 8.2e-67 258.8 433 40.4
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.1e-66 258.5 527 38.1
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.0e-64 251.9 501 37.3
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.7e-64 251.1 453 37.1
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 4.2e-63 246.5 604 34.8
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 7.2e-63 245.7 380 43.2
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 3.6e-62 243.4 471 34.2
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 3.6e-62 243.4 506 37.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 6.1e-62 242.7 470 36.2
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.0e-61 241.9 429 40.6
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 3.0e-61 240.4 422 39.6
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 3.9e-61 240.0 280 49.6
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.5e-60 238.0 462 36.4
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.9e-60 237.7 432 37.0
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 7.4e-60 235.7 498 35.3
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 2.2e-59 234.2 489 36.2
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 2.8e-59 233.8 297 45.5
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 3.7e-59 233.4 436 39.2
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 8.2e-59 232.3 484 35.5
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 2.4e-58 230.7 443 38.1
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 2.4e-58 230.7 468 34.8
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 6.9e-58 229.2 438 36.5
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 1.2e-57 228.4 483 34.2
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 2.0e-57 227.6 447 37.6
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.6e-57 227.3 586 32.3
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.6e-57 227.3 472 35.6
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.4e-57 226.9 473 35.3
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 3.4e-57 226.9 264 49.6
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 4.5e-57 226.5 366 39.9
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 7.7e-57 225.7 432 38.0
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 1.3e-56 224.9 503 33.8
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.9e-56 223.8 440 37.0
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 5.0e-56 223.0 253 47.8
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 5.0e-56 223.0 508 35.2
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 1.1e-55 221.9 434 35.7
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.4e-55 221.5 663 30.8
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 2.5e-55 220.7 455 34.9
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 4.2e-55 219.9 444 35.8
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 5.5e-55 219.5 484 34.5
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 7.2e-55 219.2 462 34.8
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.2e-54 218.4 459 35.3
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.6e-54 218.0 472 35.0
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 6.1e-54 216.1 476 34.9
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.0e-53 215.3 460 33.9
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.8e-53 214.5 492 32.3
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 3.0e-53 213.8 491 33.4
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 3.9e-53 213.4 468 35.3
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 2.0e-52 211.1 425 34.8
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 9.7e-52 208.8 510 32.0
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.3e-51 208.4 438 36.3
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.7e-51 208.0 456 34.9
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 2.2e-51 207.6 422 36.5
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.8e-51 207.2 486 34.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.8e-51 207.2 466 34.3
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 8.2e-51 205.7 421 36.6
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 4.1e-50 203.4 427 36.5
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.0e-49 201.1 421 35.6
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 3.4e-49 200.3 195 53.3
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 5.9e-49 199.5 421 35.6
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.0e-48 198.7 421 35.2
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 3.8e-48 196.8 421 34.9
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 5.0e-48 196.4 421 34.2
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 5.0e-48 196.4 315 40.3
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 6.5e-48 196.1 379 37.7
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.1e-47 195.3 420 36.7
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.5e-47 193.0 605 30.4
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.1e-46 191.0 536 31.3
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.6e-46 190.3 151 61.6
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 6.1e-46 189.5 405 37.3
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 7.4e-44 182.6 409 33.3
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 1.7e-43 181.4 417 34.8
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 8.2e-43 179.1 211 47.9
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 3.1e-42 177.2 419 33.2
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.6e-41 174.1 504 29.6
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.3e-40 171.8 579 30.2
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.7e-40 171.4 357 35.9
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 3.5e-33 147.1 461 29.3
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.2e-32 144.4 201 40.8
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 2.9e-32 144.1 437 31.4
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 6.5e-32 142.9 386 31.9
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 1.8e-29 134.8 246 37.0
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 2.3e-29 134.4 156 45.5
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 1.7e-27 128.3 222 37.4
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 2.9e-24 117.5 124 52.4
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 3.2e-23 114.0 79 65.8
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.1e-22 111.3 79 63.3
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 5.0e-16 90.1 84 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.2e-14 85.5 415 26.7
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 1.0e-13 82.4 76 50.0
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 3.0e-13 80.9 151 33.1
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 1.7e-11 75.1 318 26.1
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 3.5e-09 67.4 46 67.4
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 5.0e-08 63.5 73 46.6
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 4.3e-07 60.5 100 41.0
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 3.6e-06 57.4 80 48.8
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 3.6e-06 57.4 80 48.8
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 6.2e-06 56.6 264 26.5


User provided reference genes

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