Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 2.6e-58 228.4 107 100.0
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 7.5e-50 200.3 103 89.3
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-49 199.5 103 88.3
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-49 199.5 103 88.3
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 6.4e-49 197.2 103 86.4
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.4e-48 196.1 103 86.4
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 1.4e-48 196.1 103 87.4
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.9e-48 195.7 103 86.4
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.9e-48 195.7 103 85.4
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 1.9e-48 195.7 106 84.0
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 1.9e-48 195.7 103 85.4
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 1.9e-48 195.7 103 85.4
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 2.4e-48 195.3 103 86.4
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 2.4e-48 195.3 103 85.4
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 2.4e-48 195.3 103 86.4
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 4.1e-48 194.5 103 86.4
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 4.1e-48 194.5 103 85.4
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 5.4e-48 194.1 103 85.4
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 7.1e-48 193.7 103 85.4
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 7.1e-48 193.7 103 85.4
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 9.2e-48 193.4 103 84.5
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 9.2e-48 193.4 103 84.5
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 9.2e-48 193.4 103 85.4
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 1.2e-47 193.0 103 84.5
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 1.6e-47 192.6 103 84.5
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 1.6e-47 192.6 103 85.4
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 1.6e-47 192.6 103 84.5
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 2.7e-47 191.8 103 83.5
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 3.5e-47 191.4 103 83.5
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 3.5e-47 191.4 103 82.5
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 7.8e-47 190.3 103 83.5
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 7.8e-47 190.3 103 83.5
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 7.8e-47 190.3 103 84.5
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.0e-46 189.9 103 84.5
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 1.0e-46 189.9 103 82.5
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 1.0e-46 189.9 103 83.5
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 1.3e-46 189.5 103 86.4
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 1.3e-46 189.5 103 83.5
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.3e-46 189.5 103 81.6
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.7e-46 189.1 103 80.6
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 3.0e-46 188.3 103 82.5
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 3.0e-46 188.3 103 84.5
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 3.0e-46 188.3 103 84.5
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 3.0e-46 188.3 103 84.5
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 6.6e-46 187.2 103 80.6
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 6.6e-46 187.2 103 83.5
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 6.6e-46 187.2 103 81.6
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 8.6e-46 186.8 101 83.2
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 8.6e-46 186.8 103 79.6
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.1e-45 186.4 103 83.5
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 1.5e-45 186.0 103 83.5
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.9e-45 185.7 103 81.6
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.5e-45 185.3 103 80.6
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 4.3e-45 184.5 103 79.6
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 5.6e-45 184.1 103 79.6
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 5.6e-45 184.1 103 83.5
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 7.3e-45 183.7 103 81.6
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 7.3e-45 183.7 103 79.6
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 2.1e-44 182.2 99 82.8
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 2.1e-44 182.2 103 79.6
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 4.7e-44 181.0 103 78.6
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 6.2e-44 180.6 102 82.4
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 8.9e-43 176.8 103 74.8
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 8.9e-43 176.8 103 76.7
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 8.9e-43 176.8 103 76.7
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 8.9e-43 176.8 103 76.7
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.5e-42 176.0 103 75.7
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 2.0e-42 175.6 103 75.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.0e-42 175.6 103 73.8
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.0e-42 175.6 103 74.8
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 3.4e-42 174.9 103 75.7
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.4e-42 174.9 103 76.7
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 5.8e-42 174.1 103 72.8
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 5.8e-42 174.1 103 74.8
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.8e-42 174.1 103 74.8
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 5.8e-42 174.1 103 78.6
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 9.9e-42 173.3 103 72.8
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 9.9e-42 173.3 103 76.7
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.3e-41 172.9 103 75.7
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 1.3e-41 172.9 103 72.8
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 1.3e-41 172.9 103 75.7
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 2.2e-41 172.2 103 72.8
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 2.9e-41 171.8 103 73.8
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.9e-41 171.8 103 74.8
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 3.8e-41 171.4 103 72.8
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 4.9e-41 171.0 103 71.8
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 6.4e-41 170.6 101 75.2
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 1.1e-40 169.9 103 70.9
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 1.9e-40 169.1 103 70.9
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 2.4e-40 168.7 99 76.8
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 4.1e-40 167.9 103 69.9
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 7.1e-40 167.2 104 74.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 9.2e-40 166.8 102 73.5
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 9.2e-40 166.8 103 69.9
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 9.2e-40 166.8 103 74.8
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 9.2e-40 166.8 103 73.8
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 1.2e-39 166.4 103 75.7
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.2e-39 166.4 103 68.9
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.1e-39 165.6 103 71.8
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 2.7e-39 165.2 104 73.1
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 3.5e-39 164.9 103 71.8
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 4.6e-39 164.5 101 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 6.0e-39 164.1 103 68.0
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 6.0e-39 164.1 101 70.3
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 1.3e-38 162.9 103 70.9
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 1.7e-38 162.5 99 72.7
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.7e-38 162.5 99 72.7
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 1.7e-38 162.5 99 72.7
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 2.3e-38 162.2 103 70.9
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 3.9e-38 161.4 103 67.0
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 5.1e-38 161.0 99 71.7
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 5.1e-38 161.0 99 71.7
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 1.1e-37 159.8 103 67.0
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.5e-37 159.5 103 70.9
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.9e-37 159.1 91 76.9
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 1.2e-36 156.4 101 67.3
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 1.6e-36 156.0 101 65.3
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 1.6e-36 156.0 94 75.5
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.1e-36 155.6 89 75.3
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 3.6e-36 154.8 105 66.7
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 1.1e-35 153.3 103 65.0
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 6.9e-35 150.6 103 67.0
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 6.9e-35 150.6 103 67.0
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 2.0e-34 149.1 103 68.0
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.0e-34 149.1 103 64.1
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.0e-34 149.1 103 64.1
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 2.6e-34 148.7 103 68.9
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 4.4e-34 147.9 99 67.7
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 5.8e-34 147.5 103 65.0
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 5.8e-34 147.5 103 65.0
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 5.8e-34 147.5 103 65.0
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 1.7e-33 146.0 103 66.0
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 1.7e-33 146.0 78 83.3
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 1.9e-32 142.5 103 60.2
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.9e-32 142.5 100 63.0
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 1.2e-31 139.8 102 58.8
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 1.7e-30 136.0 96 62.5
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 4.3e-29 131.3 105 58.1
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.3e-29 131.3 103 54.4
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 5.6e-29 131.0 105 58.1
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 5.6e-29 131.0 105 58.1
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 5.6e-29 131.0 105 58.1
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 7.3e-29 130.6 103 61.2
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 2.1e-28 129.0 91 62.6
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 6.2e-28 127.5 105 56.2
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.4e-27 126.3 98 58.2
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 1.2e-26 123.2 103 56.3
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 7.9e-23 110.5 79 65.8
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.3e-20 103.2 100 41.0
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 9.6e-13 77.0 78 50.0
CsaV3_3G015510 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.4e-11 73.2 88 43.2
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 6.9e-11 70.9 103 40.8
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.5e-08 61.2 36 72.2
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 2.7e-07 58.9 104 35.6
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 1.0e-06 57.0 42 66.7


User provided reference genes

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