Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06427 Nelumbo nucifera HOM05D005106 ORTHO05D006224 1.9e-113 412.5 213 100.0
Gorai.005G199600 Gossypium raimondii HOM05D005106 ORTHO05D006224 4.3e-97 358.2 216 85.2
Lj3g0003979 Lotus japonicus HOM05D005106 ORTHO05D006224 5.6e-97 357.8 212 87.3
CSS0035973 Camellia sinensis var. sinensis HOM05D005106 ORTHO05D006224 6.9e-95 350.9 211 87.2
Duzib132G0108 Durio zibethinus HOM05D005106 ORTHO05D006224 6.9e-95 350.9 212 85.4
MSTRG.25482 Avicennia marina HOM05D005106 ORTHO05D006224 2.0e-94 349.4 214 81.3
Gohir.D02G177800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 7.6e-94 347.4 212 84.0
Thecc.02G185300 Theobroma cacao HOM05D005106 ORTHO05D006224 2.9e-93 345.5 214 83.2
Eucgr.K01050 Eucalyptus grandis HOM05D005106 ORTHO05D006224 8.4e-93 344.0 212 81.6
CANSAT64G0803 Cannabis sativa HOM05D005106 ORTHO05D006224 7.9e-91 337.4 212 81.6
Medtr2g090655 Medicago truncatula HOM05D005106 ORTHO05D006224 1.0e-90 337.0 226 76.1
CiPaw.03G180900 Carya illinoinensis HOM05D005106 ORTHO05D006224 1.8e-90 336.3 212 83.5
FAN09G4502 Fragaria x ananassa HOM05D005106 ORTHO05D006224 3.0e-90 335.5 214 82.2
Gohir.A03G154800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 1.1e-89 333.6 213 82.2
Duzib132G0012 Durio zibethinus HOM05D005106 ORTHO05D006224 4.3e-89 331.6 200 85.0
Potri.007G137400 Populus trichocarpa HOM05D005106 ORTHO05D006224 4.3e-89 331.6 216 78.7
Carub.0008s0432 Capsella rubella HOM05D005106 ORTHO05D006224 5.6e-89 331.3 214 78.0
Dinv21367 Davidia involucrata HOM05D005106 ORTHO05D006224 9.6e-89 330.5 212 84.0
TWI23G0861 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 9.6e-89 330.5 211 82.5
MELO3C026304.2 Cucumis melo HOM05D005106 ORTHO05D006224 6.2e-88 327.8 212 83.0
CsaV3_4G010150 Cucumis sativus L. HOM05D005106 ORTHO05D006224 6.2e-88 327.8 212 83.0
ECA238G0369 Erigeron canadensis HOM05D005106 ORTHO05D006224 1.8e-87 326.2 215 81.4
Actinidia06452 Actinidia chinensis HOM05D005106 ORTHO05D006224 9.0e-87 323.9 212 79.7
PSO541G1716 Papaver somniferum HOM05D005106 ORTHO05D006224 1.2e-86 323.6 220 80.5
PSO675G4288 Papaver somniferum HOM05D005106 ORTHO05D006224 2.0e-86 322.8 222 75.2
Sed0010388 Sechium edule HOM05D005106 ORTHO05D006224 4.5e-86 321.6 213 81.7
Duzib052G0667 Durio zibethinus HOM05D005106 ORTHO05D006224 5.8e-86 321.2 212 80.7
Glyma.12G206400 Glycine max HOM05D005106 ORTHO05D006224 5.8e-86 321.2 212 80.7
Thhalv10003260m.g Eutrema salsugineum HOM05D005106 ORTHO05D006224 2.2e-85 319.3 216 79.2
THA.LOC104801162 Tarenaya hassleriana HOM05D005106 ORTHO05D006224 2.9e-85 318.9 199 83.9
Manes.13G142600 Manihot esculenta HOM05D005106 ORTHO05D006224 3.8e-85 318.5 214 82.2
Nitab4.5_0002677g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 3.8e-85 318.5 213 77.0
PGR142G3950 Punica granatum HOM05D005106 ORTHO05D006224 3.8e-85 318.5 212 82.1
FvH4_6g26630 Fragaria vesca HOM05D005106 ORTHO05D006224 4.9e-85 318.2 213 81.7
Ciclev10016365m.g Citrus clementina HOM05D005106 ORTHO05D006224 6.5e-85 317.8 213 78.9
TWI59G0090 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 8.4e-85 317.4 211 80.1
Actinidia22276 Actinidia chinensis HOM05D005106 ORTHO05D006224 2.5e-84 315.8 214 76.6
AUR62016818 Chenopodium quinoa HOM05D005106 ORTHO05D006224 7.1e-84 314.3 222 74.3
unitig_37.g13100 Utricularia gibba HOM05D005106 ORTHO05D006224 1.2e-83 313.5 219 74.4
TAR627G0282 Trochodendron aralioides HOM05D005106 ORTHO05D006224 1.6e-83 313.2 215 76.3
Psat5g273600 Pisum sativum HOM05D005106 ORTHO05D006224 2.7e-83 312.4 220 78.6
Migut.C01328 Erythranthe guttata HOM05D005106 ORTHO05D006224 6.0e-83 311.2 213 74.6
EL10As7g23802 Beta vulgaris HOM05D005106 ORTHO05D006224 8.7e-82 307.4 221 76.5
Prupe.3G134700 Prunus persica HOM05D005106 ORTHO05D006224 1.1e-81 307.0 213 79.8
Glyma.13G294500 Glycine max HOM05D005106 ORTHO05D006224 1.9e-81 306.2 214 78.0
Phvul.005G100900 Phaseolus vulgaris HOM05D005106 ORTHO05D006224 5.7e-81 304.7 217 77.4
DCAR_018109 Daucus carota HOM05D005106 ORTHO05D006224 9.6e-81 303.9 228 75.0
MD17G1234600 Malus domestica HOM05D005106 ORTHO05D006224 2.1e-80 302.8 215 78.1
CiPaw.04G128700 Carya illinoinensis HOM05D005106 ORTHO05D006224 2.8e-80 302.4 211 72.5
Sc04g0004790 Simmondsia chinensis HOM05D005106 ORTHO05D006224 8.2e-80 300.8 227 69.6
Aqoxy1G02310 Aquilegia oxysepala HOM05D005106 ORTHO05D006224 6.9e-79 297.7 222 75.2
ClCG02G009520 Citrullus lanatus HOM05D005106 ORTHO05D006224 2.6e-78 295.8 229 68.6
Potri.017G014600 Populus trichocarpa HOM05D005106 ORTHO05D006224 5.8e-78 294.7 219 70.3
Nitab4.5_0000061g0200 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.3e-77 293.5 220 70.5
Zm00001eb184540 Zea mays HOM05D005106 ORTHO05D006224 1.7e-77 293.1 214 72.9
SEGI_07457 Sequoiadendron giganteum HOM05D005106 ORTHO05D006224 2.2e-77 292.7 208 72.6
Zm00001eb246940 Zea mays HOM05D005106 ORTHO05D006224 1.4e-76 290.0 214 72.4
Solyc02g062620.3 Solanum lycopersicum HOM05D005106 ORTHO05D006224 1.9e-76 289.7 231 67.5
Os02g0612300 Oryza sativa ssp. japonica HOM05D005106 ORTHO05D006224 7.2e-76 287.7 212 71.2
AUR62010400 Chenopodium quinoa HOM05D005106 ORTHO05D006224 1.3e-74 283.5 245 64.9
FAN05G0301 Fragaria x ananassa HOM05D005106 ORTHO05D006224 3.9e-74 282.0 267 62.2
Sp2g09020 Schrenkiella parvula HOM05D005106 ORTHO05D006224 3.9e-74 282.0 217 72.4
TPR.G6465 Trifolium pratense HOM05D005106 ORTHO05D006224 1.5e-73 280.0 235 70.2
Ah.11g045690 Amaranthus hybridus HOM05D005106 ORTHO05D006224 1.9e-73 279.6 214 66.4
Sc04g0004750 Simmondsia chinensis HOM05D005106 ORTHO05D006224 1.9e-73 279.6 153 86.9
SGA_v2.0_scaffold118G32565 Striga asiatica HOM05D005106 ORTHO05D006224 4.3e-73 278.5 235 64.7
CARHR179060 Cardamine hirsuta HOM05D005106 ORTHO05D006224 9.7e-73 277.3 216 70.8
AL8G15820 Arabidopsis lyrata HOM05D005106 ORTHO05D006224 4.8e-72 275.0 217 72.4
AT5G44200 Arabidopsis thaliana HOM05D005106 ORTHO05D006224 1.1e-71 273.9 216 72.2
Peaxi162Scf00688g00358 Petunia axillaris HOM05D005106 ORTHO05D006224 3.1e-71 272.3 231 65.8
HPP92_007900 Vanilla planifolia HOM05D005106 ORTHO05D006224 1.5e-70 270.0 211 67.3
Lj7A285G44 Lonicera japonica HOM05D005106 ORTHO05D006224 2.0e-70 269.6 205 68.8
Atru.chr6.2876 Acer truncatum HOM05D005106 ORTHO05D006224 6.5e-69 264.6 222 68.9
BcaC06g31640 Brassica carinata HOM05D005106 ORTHO05D006224 8.5e-69 264.2 221 70.1
A06p47380 Brassica napus HOM05D005106 ORTHO05D006224 8.5e-69 264.2 229 69.0
BraA06t27608Z Brassica rapa HOM05D005106 ORTHO05D006224 8.5e-69 264.2 229 69.0
BcaC06g34582 Brassica carinata HOM05D005106 ORTHO05D006224 4.2e-68 261.9 225 69.3
BolC7t43217H Brassica oleracea HOM05D005106 ORTHO05D006224 4.2e-68 261.9 225 69.3
C07p26890 Brassica napus HOM05D005106 ORTHO05D006224 1.6e-67 260.0 223 68.6
Rhsim05G0079400 Rhododendron simsii HOM05D005106 ORTHO05D006224 1.6e-67 260.0 224 65.2
Mapoly0001s0392 Marchantia polymorpha HOM05D005106 ORTHO05D006224 7.9e-67 257.7 206 66.0
Aa31LG5G3040 Aethionema arabicum HOM05D005106 ORTHO05D006224 8.8e-66 254.2 230 67.0
arahy.Tifrunner.gnm1.ann1.UE89WV Arachis hypogaea HOM05D005106 ORTHO05D006224 3.7e-64 248.8 218 67.4
FAN14G3298 Fragaria x ananassa HOM05D005106 ORTHO05D006224 4.8e-64 248.4 211 69.7
MD09G1242300 Malus domestica HOM05D005106 ORTHO05D006224 1.8e-63 246.5 135 86.7
AUR62010422 Chenopodium quinoa HOM05D005106 ORTHO05D006224 2.4e-63 246.1 212 64.2
Pp3c17_11470 Physcomitrium patens HOM05D005106 ORTHO05D006224 5.3e-63 245.0 221 61.1
arahy.Tifrunner.gnm1.ann1.RWFH5R Arachis hypogaea HOM05D005106 ORTHO05D006224 1.5e-62 243.4 242 62.0
HanXRQChr07g0195561 Helianthus annuus HOM05D005106 ORTHO05D006224 3.4e-62 242.3 218 67.4
COL.COLO4_18047 Corchorus olitorius HOM05D005106 ORTHO05D006224 3.8e-61 238.8 179 70.9
CBR_g4062 Chara braunii HOM05D005106 ORTHO05D006224 3.2e-60 235.7 208 62.0
AagrBONN_evm.TU.Sc2ySwM_362.2111 Anthoceros agrestis HOM05D005106 ORTHO05D006224 1.1e-57 227.3 142 74.6
Hund09671 Selenicereus undatus HOM05D005106 ORTHO05D006224 5.9e-54 214.9 211 55.9
vmacro09002 Vaccinium macrocarpon HOM05D005106 ORTHO05D006224 2.7e-51 206.1 98 95.9
GSVIVG01020599001 Vitis vinifera HOM05D005106 ORTHO05D006224 8.0e-51 204.5 98 93.9
Sopen02g013650 Solanum pennellii HOM05D005106 ORTHO05D006224 1.0e-50 204.1 98 92.9
FAN02G3272 Fragaria x ananassa HOM05D005106 ORTHO05D006224 2.3e-50 203.0 211 60.7
Lalb_Chr14g0367111 Lupinus albus HOM05D005106 ORTHO05D006224 3.0e-50 202.6 98 93.9
ATR0665G640 Amborella trichopoda HOM05D005106 ORTHO05D006224 4.0e-50 202.2 97 93.8
ClCG09G011570 Citrullus lanatus HOM05D005106 ORTHO05D006224 5.2e-50 201.8 98 92.9
HanXRQChr14g0454171 Helianthus annuus HOM05D005106 ORTHO05D006224 6.7e-50 201.4 98 91.8
Nitab4.5_0007033g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 6.7e-50 201.4 98 91.8
Ca_01483_v3 Cicer arietinum L. HOM05D005106 ORTHO05D006224 8.8e-50 201.1 98 91.8
Lalb_Chr22g0356721 Lupinus albus HOM05D005106 ORTHO05D006224 1.1e-49 200.7 98 91.8
Cc10_g09490 Coffea canephora HOM05D005106 ORTHO05D006224 4.4e-49 198.7 97 91.8
Sabra17G0011800 Salix brachista HOM05D005106 ORTHO05D006224 5.7e-49 198.4 98 90.8
Cpa.g.sc83.87 Carica papaya HOM05D005106 ORTHO05D006224 7.5e-49 198.0 98 90.8
Lsat_1_v5_gn_4_146681 Lactuca sativa HOM05D005106 ORTHO05D006224 1.1e-47 194.1 98 88.8
SMO339G0037 Selaginella moellendorffii HOM05D005106 ORTHO05D006224 1.4e-47 193.7 98 84.7
AUR62010418 Chenopodium quinoa HOM05D005106 ORTHO05D006224 2.4e-47 193.0 98 88.8
EL10Ac3g06463 Beta vulgaris HOM05D005106 ORTHO05D006224 2.7e-46 189.5 98 87.8
RcHm_v2.0_Chr2g0127331 Rosa chinensis HOM05D005106 ORTHO05D006224 5.5e-44 181.8 90 92.2
Lsat_1_v5_gn_2_108860 Lactuca sativa HOM05D005106 ORTHO05D006224 2.1e-43 179.9 90 87.8
Nitab4.5_0005272g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.8e-42 176.8 196 55.6
Cre10.g437850 Chlamydomonas reinhardtii HOM05D005106 ORTHO05D006224 4.0e-42 175.6 123 65.9
Nitab4.5_0008100g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 7.5e-41 171.4 87 88.5
PRCOL_00004370 Prasinoderma coloniale HOM05D005106 ORTHO05D006224 8.3e-40 167.9 111 64.0
MCO12G258 Micromonas commoda HOM05D005106 ORTHO05D006224 2.4e-39 166.4 106 67.9
Sc21g0003220 Simmondsia chinensis HOM05D005106 ORTHO05D006224 1.2e-38 164.1 162 59.3
EL10Ac7g17400 Beta vulgaris HOM05D005106 ORTHO05D006224 3.8e-37 159.1 98 76.5
GSVIVG01020600001 Vitis vinifera HOM05D005106 ORTHO05D006224 9.2e-31 137.9 115 76.5
Cc10_g09480 Coffea canephora HOM05D005106 ORTHO05D006224 2.7e-30 136.3 118 70.3
Cfa022862 Carpinus fangiana HOM05D005106 ORTHO05D006224 2.5e-28 129.8 86 68.6
SHI10494 Sapria himalayana HOM05D005106 ORTHO05D006224 1.2e-27 127.5 184 43.5
Nitab4.5_0000016g0640 Nicotiana tabacum HOM05D005106 ORTHO05D006224 3.6e-27 125.9 64 82.8
Gohir.A11G293700 Gossypium hirsutum HOM05D005106 ORTHO05D006224 4.7e-27 125.6 73 76.7
MBI07_g29116_MAGBIO Magnolia biondii HOM05D005106 ORTHO05D006224 4.7e-27 125.6 57 96.5
SalBow7G4324 Salvia bowleyana HOM05D005106 ORTHO05D006224 1.0e-26 124.4 61 93.4
EL10Ac5g12160 Beta vulgaris HOM05D005106 ORTHO05D006224 7.5e-25 118.2 59 89.8
VMungo1080G0911 Vigna mungo HOM05D005106 ORTHO05D006224 7.5e-25 118.2 117 68.4
Cpa.g.sc83.88 Carica papaya HOM05D005106 ORTHO05D006224 1.4e-23 114.0 109 70.6
Nitab4.5_0000016g0650 Nicotiana tabacum HOM05D005106 ORTHO05D006224 5.8e-17 92.0 82 62.2
RcHm_v2.0_Chr2g0127341 Rosa chinensis HOM05D005106 ORTHO05D006224 7.5e-17 91.7 82 62.2
Nitab4.5_0012603g0010 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.4e-15 87.4 41 95.1
Nitab4.5_0000556g0280 Nicotiana tabacum HOM05D005106 ORTHO05D006224 4.1e-15 85.9 49 83.7
Sc21g0003210 Simmondsia chinensis HOM05D005106 ORTHO05D006224 9.2e-15 84.7 40 95.0
Sabra05G0033000 Salix brachista HOM05D005106 ORTHO05D006224 1.0e-13 81.3 46 78.3
HanXRQChr14g0454161 Helianthus annuus HOM05D005106 ORTHO05D006224 6.6e-13 78.6 85 67.1
vmacro09001 Vaccinium macrocarpon HOM05D005106 ORTHO05D006224 6.2e-11 72.0 86 52.3
EL10As5g23592 Beta vulgaris HOM05D005106 ORTHO05D006224 1.1e-10 71.2 133 36.8
Nitab4.5_0007033g0050 Nicotiana tabacum HOM05D010426 ORTHO05D003796 2.2e-08 63.5 30 86.7
Eucgr.J02066 Eucalyptus grandis HOM05D001197 ORTHO05D000124 6.4e-08 62.0 69 44.9
Psat5g283320 Pisum sativum HOM05D005106 ORTHO05D000124 1.9e-07 60.5 68 45.6
THA.LOC104810813 Tarenaya hassleriana HOM05D000142 ORTHO05D000124 2.4e-07 60.1 68 42.6
ATR0665G079 Amborella trichopoda HOM05D005106 ORTHO05D006224 3.2e-07 59.7 74 54.1
Phvul.L003243 Phaseolus vulgaris HOM05D001197 ORTHO05D000124 7.1e-07 58.5 68 39.7
Manes.11G133601 Manihot esculenta HOM05D000142 ORTHO05D000124 1.6e-06 57.4 69 39.1
Medtr2g096560 Medicago truncatula HOM05D001197 ORTHO05D000124 1.6e-06 57.4 68 42.6
ECA236G1727 Erigeron canadensis HOM05D001197 ORTHO05D000124 2.1e-06 57.0 68 41.2
Lalb_Chr14g0375031 Lupinus albus HOM05D001197 ORTHO05D000124 2.1e-06 57.0 68 45.6
Glyma.13G333700 Glycine max HOM05D001197 ORTHO05D000124 2.7e-06 56.6 68 42.6
Lj3g0009978 Lotus japonicus HOM05D001197 ORTHO05D000124 3.5e-06 56.2 68 41.2
MSTRG.5866 Avicennia marina HOM05D000142 ORTHO05D000124 4.6e-06 55.8 69 40.6
Solyc11g073238.1 Solanum lycopersicum HOM05D001197 ORTHO05D000124 4.6e-06 55.8 68 39.7
Zm00001eb355920 Zea mays HOM05D005106 ORTHO05D006224 4.6e-06 55.8 29 86.2
Carub.0008s2060 Capsella rubella HOM05D001197 ORTHO05D000124 6.0e-06 55.5 68 38.2
Aa31LG4G15140 Aethionema arabicum HOM05D001197 ORTHO05D000124 7.8e-06 55.1 68 38.2
A02p06770 Brassica napus HOM05D000142 ORTHO05D000124 7.8e-06 55.1 68 39.7
C02p12060 Brassica napus HOM05D000142 ORTHO05D000124 7.8e-06 55.1 68 39.7
BraA02t05756Z Brassica rapa HOM05D000142 ORTHO05D000124 7.8e-06 55.1 68 39.7
Carub.0005s1188 Capsella rubella HOM05D001197 ORTHO05D000124 7.8e-06 55.1 68 38.2
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 7.8e-06 55.1 180 30.6


User provided reference genes

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