Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04359 Nelumbo nucifera HOM05D000280 ORTHO05D018240 1.6e-25 118.6 60 100.0
Nn2g11739 Nelumbo nucifera HOM05D000280 ORTHO05D003998 1.5e-15 85.5 51 80.4
PSO210G6369 Papaver somniferum HOM05D000280 ORTHO05D003998 2.0e-15 85.1 51 76.5
PSO832G1708 Papaver somniferum HOM05D000280 ORTHO05D003998 2.0e-15 85.1 51 76.5
Actinidia00728 Actinidia chinensis HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Actinidia24315 Actinidia chinensis HOM05D000280 ORTHO05D018240 4.4e-15 84.0 44 90.9
Aqoxy2G03229 Aquilegia oxysepala HOM05D000280 ORTHO05D003998 4.4e-15 84.0 51 76.5
CSS0001241 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
CANSAT25G3248 Cannabis sativa HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Cfa006096 Carpinus fangiana HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
CiPaw.07G095200 Carya illinoinensis HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Haze_04758 Corylus avellana HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
DCAR_002757 Daucus carota HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
DCAR_005822 Daucus carota HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Gohir.A12G006500 Gossypium hirsutum HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Gohir.D12G005900 Gossypium hirsutum HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Gorai.008G005900 Gossypium raimondii HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Lj1A43T59 Lonicera japonica HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Manes.01G210600 Manihot esculenta HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
QL12p022891 Quercus lobata HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
Rhsim13G0022100 Rhododendron simsii HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
vmacro02545 Vaccinium macrocarpon HOM05D000280 ORTHO05D003998 4.4e-15 84.0 44 90.9
CAN.G1807.3 Capsicum annuum HOM05D000280 ORTHO05D003998 5.8e-15 83.6 44 88.6
CAN.G956.1 Capsicum annuum HOM05D000280 ORTHO05D003998 5.8e-15 83.6 44 88.6
Nn8g39176 Nelumbo nucifera HOM05D000280 ORTHO05D003998 5.8e-15 83.6 51 76.5
Solyc09g073000.3 Solanum lycopersicum HOM05D000280 ORTHO05D003998 5.8e-15 83.6 44 88.6
Sopen09g028810 Solanum pennellii HOM05D000280 ORTHO05D003998 5.8e-15 83.6 44 88.6
PGSC0003DMG400003838 Solanum tuberosum HOM05D000280 ORTHO05D003998 5.8e-15 83.6 44 88.6
TAR636G2522 Trochodendron aralioides HOM05D000280 ORTHO05D003998 5.8e-15 83.6 51 76.5
Prupe.8G246000 Prunus persica HOM05D000280 ORTHO05D003998 7.5e-15 83.2 44 90.9
CAN.G134.79 Capsicum annuum HOM05D000280 ORTHO05D003998 9.8e-15 82.8 47 83.0
Ca_08560_v3 Cicer arietinum L. HOM05D000280 ORTHO05D003998 9.8e-15 82.8 44 88.6
Ca_08594_v3 Cicer arietinum L. HOM05D000280 ORTHO05D003998 9.8e-15 82.8 44 88.6
Hma1.2p1_0257F.1_g103840 Hydrangea macrophylla HOM05D000280 ORTHO05D003998 9.8e-15 82.8 44 88.6
Lj2C1179G13 Lonicera japonica HOM05D000280 ORTHO05D003998 9.8e-15 82.8 44 88.6
Lalb_Chr20g0107741 Lupinus albus HOM05D000280 ORTHO05D003998 9.8e-15 82.8 44 88.6
TPR.G32801 Trifolium pratense HOM05D000280 ORTHO05D003998 9.8e-15 82.8 44 88.6
Aqoxy5G00543 Aquilegia oxysepala HOM05D000280 ORTHO05D003998 1.3e-14 82.4 51 76.5
Ca_00610_v3 Cicer arietinum L. HOM05D000280 ORTHO05D003998 1.3e-14 82.4 51 76.5
MELO3C015864.2 Cucumis melo HOM05D000280 ORTHO05D003998 1.3e-14 82.4 44 88.6
CsaV3_7G028550 Cucumis sativus L. HOM05D000280 ORTHO05D003998 1.3e-14 82.4 44 88.6
Psat1g184840 Pisum sativum HOM05D000280 ORTHO05D003998 1.3e-14 82.4 51 76.5
Potri.002G215900 Populus trichocarpa HOM05D000280 ORTHO05D003998 1.3e-14 82.4 44 88.6
Sed0007790 Sechium edule HOM05D000280 ORTHO05D003998 1.3e-14 82.4 44 88.6
Sed0014932 Sechium edule HOM05D000280 ORTHO05D003998 1.3e-14 82.4 44 88.6
TPR.G28920 Trifolium pratense HOM05D000280 ORTHO05D003998 1.3e-14 82.4 51 76.5
GSVIVG01011073001 Vitis vinifera HOM05D000280 ORTHO05D003998 1.3e-14 82.4 44 88.6
CDE05G3568 Ceratophyllum demersum HOM05D000280 ORTHO05D003998 1.7e-14 82.0 51 74.5
CDE07G1229 Ceratophyllum demersum HOM05D000280 ORTHO05D003998 1.7e-14 82.0 51 74.5
Glyma.13G210600 Glycine max HOM05D000280 ORTHO05D003998 1.7e-14 82.0 51 74.5
Lalb_Chr15g0087291 Lupinus albus HOM05D000280 ORTHO05D003998 1.7e-14 82.0 51 74.5
Manes.05G072900 Manihot esculenta HOM05D000280 ORTHO05D003998 1.7e-14 82.0 44 88.6
Nitab4.5_0008204g0050 Nicotiana tabacum HOM05D000280 ORTHO05D003998 1.7e-14 82.0 44 86.4
Psat3g065800 Pisum sativum HOM05D000280 ORTHO05D003998 1.7e-14 82.0 44 88.6
Potri.014G138100 Populus trichocarpa HOM05D000280 ORTHO05D003998 1.7e-14 82.0 44 88.6
Sabra14G0104200 Salix brachista HOM05D000280 ORTHO05D003998 1.7e-14 82.0 44 88.6
TWI59G0558 Tripterygium wilfordii HOM05D000280 ORTHO05D003998 1.7e-14 82.0 44 88.6
arahy.Tifrunner.gnm1.ann1.37CK0J Arachis hypogaea HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 86.4
arahy.Tifrunner.gnm1.ann1.EF2YWP Arachis hypogaea HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 86.4
Lj1g0007555 Lotus japonicus HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 86.4
PGR044G0952 Punica granatum HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 86.4
RcHm_v2.0_Chr6g0291851 Rosa chinensis HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 88.6
THA.LOC104801215 Tarenaya hassleriana HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 86.4
THA.LOC104826002 Tarenaya hassleriana HOM05D000280 ORTHO05D003998 2.2e-14 81.6 44 86.4
AUR62009044 Chenopodium quinoa HOM05D000280 ORTHO05D003998 2.9e-14 81.3 48 77.1
AUR62038764 Chenopodium quinoa HOM05D000280 ORTHO05D003998 2.9e-14 81.3 48 77.1
Eucgr.H01524 Eucalyptus grandis HOM05D000280 ORTHO05D003998 2.9e-14 81.3 44 86.4
Medtr7g094460 Medicago truncatula HOM05D000280 ORTHO05D003998 2.9e-14 81.3 44 86.4
Peaxi162Scf00777g00213 Petunia axillaris HOM05D000280 ORTHO05D003998 2.9e-14 81.3 44 84.1
QL06p005873 Quercus lobata HOM05D000280 ORTHO05D003998 2.9e-14 81.3 51 74.5
Sabra02G0168200 Salix brachista HOM05D000280 ORTHO05D003998 2.9e-14 81.3 44 88.6
Atru.chr5.1351 Acer truncatum HOM05D000280 ORTHO05D003998 3.7e-14 80.9 44 86.4
Ah.10g033730 Amaranthus hybridus HOM05D000280 ORTHO05D003998 3.7e-14 80.9 51 70.6
Ah.11g043690 Amaranthus hybridus HOM05D002728 ORTHO05D002874 3.7e-14 80.9 51 70.6
EL10Ac2g03731 Beta vulgaris HOM05D000280 ORTHO05D003998 3.7e-14 80.9 51 70.6
Lalb_Chr01g0020241 Lupinus albus HOM05D000280 ORTHO05D003998 3.7e-14 80.9 44 86.4
Ca_06008_v3 Cicer arietinum L. HOM05D000280 ORTHO05D018240 4.9e-14 80.5 44 86.4
ClCG09G006820 Citrullus lanatus HOM05D000280 ORTHO05D003998 4.9e-14 80.5 44 86.4
Migut.D00257 Erythranthe guttata HOM05D000280 ORTHO05D003998 4.9e-14 80.5 44 84.1
MD03G1270100 Malus domestica HOM05D000280 ORTHO05D003998 4.9e-14 80.5 44 86.4
MD11G1290900 Malus domestica HOM05D000280 ORTHO05D003998 4.9e-14 80.5 44 86.4
Phvul.006G155600 Phaseolus vulgaris HOM05D000280 ORTHO05D003998 4.9e-14 80.5 51 74.5
ATR0626G081 Amborella trichopoda HOM05D000280 ORTHO05D003998 6.4e-14 80.1 51 72.5
Duzib138G0117 Durio zibethinus HOM05D000280 ORTHO05D003998 6.4e-14 80.1 46 82.6
Glyma.03G150600 Glycine max HOM05D000280 ORTHO05D003998 6.4e-14 80.1 44 84.1
Glyma.19G153200 Glycine max HOM05D000280 ORTHO05D003998 6.4e-14 80.1 44 84.1
Nitab4.5_0000295g0150 Nicotiana tabacum HOM05D000280 ORTHO05D003998 6.4e-14 80.1 43 88.4
Nitab4.5_0006390g0030 Nicotiana tabacum HOM05D000280 ORTHO05D003998 6.4e-14 80.1 43 88.4
Phvul.001G148200 Phaseolus vulgaris HOM05D000280 ORTHO05D003998 6.4e-14 80.1 44 84.1
Hund03281 Selenicereus undatus HOM05D000280 ORTHO05D003998 6.4e-14 80.1 44 84.1
Sc05g0005090 Simmondsia chinensis HOM05D000280 ORTHO05D003998 6.4e-14 80.1 44 84.1
Solyc06g008940.4 Solanum lycopersicum HOM05D000280 ORTHO05D003998 6.4e-14 80.1 43 88.4
Sopen06g003690 Solanum pennellii HOM05D000280 ORTHO05D003998 6.4e-14 80.1 43 88.4
Zm00001eb064580 Zea mays HOM05D000280 ORTHO05D003998 6.4e-14 80.1 51 72.5
CAN.G1006.18 Capsicum annuum HOM05D000280 ORTHO05D003998 8.3e-14 79.7 43 86.0
Rhsim02G0018200 Rhododendron simsii HOM05D000280 ORTHO05D003998 8.3e-14 79.7 51 70.6
Ciclev10020118m.g Citrus clementina HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 88.6
FvH4_2g24070 Fragaria vesca HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
FAN15G3130 Fragaria x ananassa HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
FAN20G0293 Fragaria x ananassa HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
FAN24G2240 Fragaria x ananassa HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
FAN27G0360 Fragaria x ananassa HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
Peaxi162Scf00161g00144 Petunia axillaris HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
Thecc.01G284600 Theobroma cacao HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 84.1
TWI14G0121 Tripterygium wilfordii HOM05D000280 ORTHO05D003998 1.1e-13 79.3 44 86.4
Aa31LG5G2510 Aethionema arabicum HOM05D000280 ORTHO05D003998 1.4e-13 79.0 44 84.1
arahy.Tifrunner.gnm1.ann1.K4GSHL Arachis hypogaea HOM05D000280 ORTHO05D003998 1.4e-13 79.0 44 86.4
arahy.Tifrunner.gnm1.ann1.W41LIU Arachis hypogaea HOM05D000280 ORTHO05D003998 1.4e-13 79.0 44 86.4
Dinv32967 Davidia involucrata HOM05D000280 ORTHO05D003998 1.4e-13 79.0 44 86.4
Oeu011174.1 Olea europaea HOM05D000280 ORTHO05D003998 1.4e-13 79.0 44 81.8
Os03g0851100 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D003998 1.4e-13 79.0 51 72.5
PGSC0003DMG400014624 Solanum tuberosum HOM05D000280 ORTHO05D003998 1.4e-13 79.0 43 86.0
HPP92_025317 Vanilla planifolia HOM05D000280 ORTHO05D003998 1.4e-13 79.0 51 72.5
VMungo0540G2017 Vigna mungo HOM05D000280 ORTHO05D003998 1.4e-13 79.0 51 72.5
Actinidia00079 Actinidia chinensis HOM05D000280 ORTHO05D003998 1.9e-13 78.6 51 70.6
AL1G12860 Arabidopsis lyrata HOM05D000280 ORTHO05D003998 1.9e-13 78.6 44 84.1
Carub.0001s0246 Capsella rubella HOM05D000280 ORTHO05D003998 1.9e-13 78.6 44 84.1
Lj6g0018717 Lotus japonicus HOM05D000280 ORTHO05D003998 1.9e-13 78.6 51 72.5
Cc01_g19830 Coffea canephora HOM05D000280 ORTHO05D003998 2.4e-13 78.2 44 84.1
SalBow6G2887 Salvia bowleyana HOM05D000280 ORTHO05D003998 2.4e-13 78.2 44 84.1
DCAR_030588 Daucus carota HOM05D000280 ORTHO05D003998 3.2e-13 77.8 51 68.6
Dinv38367 Davidia involucrata HOM05D000280 ORTHO05D003998 3.2e-13 77.8 51 70.6
Lj6A664T63 Lonicera japonica HOM05D000280 ORTHO05D003998 3.2e-13 77.8 51 70.6
MBI17_g34955_MAGBIO Magnolia biondii HOM05D000280 ORTHO05D003998 3.2e-13 77.8 51 70.6
VMungo1383G2172 Vigna mungo HOM05D000280 ORTHO05D003998 3.2e-13 77.8 44 81.8
AT4G02930 Arabidopsis thaliana HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
BcaB01g02492 Brassica carinata HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
BcaC04g24022 Brassica carinata HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
A03p30720 Brassica napus HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
A09p02250 Brassica napus HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
C09p02350 Brassica napus HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
BolC9t53166H Brassica oleracea HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
BraA09t35874Z Brassica rapa HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
CARHR251300 Cardamine hirsuta HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 81.8
DCAR_002422 Daucus carota HOM05D000280 ORTHO05D003998 4.1e-13 77.4 51 68.6
Dinv44469 Davidia involucrata HOM05D000280 ORTHO05D003998 4.1e-13 77.4 51 70.6
Glyma.15G102202 Glycine max HOM05D000280 ORTHO05D018240 4.1e-13 77.4 45 80.0
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 4.1e-13 77.4 44 79.5
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 4.1e-13 77.4 45 75.6
vmacro15294 Vaccinium macrocarpon HOM05D000280 ORTHO05D003998 4.1e-13 77.4 44 79.5
MSTRG.21580 Avicennia marina HOM05D000280 ORTHO05D003998 5.4e-13 77.0 44 79.5
AUR62020618 Chenopodium quinoa HOM05D000280 ORTHO05D003998 5.4e-13 77.0 51 66.7
Sc24g0004080 Simmondsia chinensis HOM05D000280 ORTHO05D003998 5.4e-13 77.0 44 81.8
Zm00001eb210740 Zea mays HOM05D000280 ORTHO05D003998 5.4e-13 77.0 51 70.6
Oeu001438.1 Olea europaea HOM05D000280 ORTHO05D003998 7.1e-13 76.6 44 79.5
Cc03_g02960 Coffea canephora HOM05D000280 ORTHO05D003998 9.2e-13 76.3 51 68.6
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 9.2e-13 76.3 44 81.8
Carub.0006s3415 Capsella rubella HOM05D000280 ORTHO05D003998 1.2e-12 75.9 44 81.8
Sp1g02340 Schrenkiella parvula HOM05D000280 ORTHO05D003998 1.6e-12 75.5 44 81.8
Medtr2g021300 Medicago truncatula HOM05D000280 ORTHO05D003998 2.1e-12 75.1 44 79.5
SalBow4G2625 Salvia bowleyana HOM05D000280 ORTHO05D003998 2.1e-12 75.1 44 79.5
Ca_06006_v3 Cicer arietinum L. HOM05D000280 ORTHO05D018240 2.7e-12 74.7 42 81.0
SEGI_20288 Sequoiadendron giganteum HOM05D000280 ORTHO05D003998 2.7e-12 74.7 51 70.6
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
AL6G50000 Arabidopsis lyrata HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
BcaB01g01997 Brassica carinata HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
BcaB01g02491 Brassica carinata HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
BcaC01g06722 Brassica carinata HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
C03p37420 Brassica napus HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
BolC3t16034H Brassica oleracea HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
BraA03t12251Z Brassica rapa HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
Thhalv10028651m.g Eutrema salsugineum HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
SHI15285 Sapria himalayana HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
Sp6g02960 Schrenkiella parvula HOM05D000280 ORTHO05D003998 3.5e-12 74.3 44 79.5
C08p06840 Brassica napus HOM05D000280 ORTHO05D003998 4.6e-12 73.9 44 79.5
BolC8t47526H Brassica oleracea HOM05D000280 ORTHO05D003998 4.6e-12 73.9 44 79.5
Thhalv10007606m.g Eutrema salsugineum HOM05D000280 ORTHO05D003998 4.6e-12 73.9 44 77.3
VMungo0464G0092 Vigna mungo HOM05D001719 ORTHO05D018240 7.8e-12 73.2 44 79.5
Pp3c21_1500 Physcomitrium patens HOM05D000280 ORTHO05D003998 1.7e-11 72.0 51 66.7
Pp3c23_5580 Physcomitrium patens HOM05D000280 ORTHO05D003998 1.7e-11 72.0 51 66.7
BcaC07g37254 Brassica carinata HOM05D000280 ORTHO05D003998 2.3e-11 71.6 43 79.1
Mapoly0153s0015 Marchantia polymorpha HOM05D000280 ORTHO05D003998 3.0e-11 71.2 51 64.7
Pp3c20_17410 Physcomitrium patens HOM05D000280 ORTHO05D003998 3.9e-11 70.9 51 64.7
ECA248G2882 Erigeron canadensis HOM05D000280 ORTHO05D003998 2.5e-10 68.2 43 74.4
HanXRQChr02g0046671 Helianthus annuus HOM05D000280 ORTHO05D003998 2.5e-10 68.2 43 76.7
MSTRG.18211 Avicennia marina HOM05D000280 ORTHO05D003998 3.3e-10 67.8 44 70.5
CBR_g23086 Chara braunii HOM05D000280 ORTHO05D003998 4.3e-10 67.4 51 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3885 Anthoceros agrestis HOM05D000280 ORTHO05D003998 5.6e-10 67.0 51 62.7
ECA236G0754 Erigeron canadensis HOM05D000321 ORTHO05D000204 5.6e-10 67.0 43 74.4
HanXRQChr01g0002451 Helianthus annuus HOM05D000280 ORTHO05D003998 5.6e-10 67.0 43 74.4
SMO164G0029 Selaginella moellendorffii HOM05D000280 ORTHO05D003998 1.6e-09 65.5 44 68.2
Lsat_1_v5_gn_5_187560 Lactuca sativa HOM05D000280 ORTHO05D003998 2.1e-09 65.1 43 72.1
PRCOL_00002862 Prasinoderma coloniale HOM05D000280 ORTHO05D003998 2.1e-09 65.1 51 58.8
CARHR002710 Cardamine hirsuta HOM05D000280 ORTHO05D003998 2.3e-08 61.6 38 76.3
Medtr3g072130 Medicago truncatula HOM05D000280 ORTHO05D003998 2.2e-06 55.1 44 63.6
Hund19399 Selenicereus undatus HOM05D000280 ORTHO05D003998 4.9e-06 53.9 37 64.9
Cre06.g259150 Chlamydomonas reinhardtii HOM05D000280 ORTHO05D003998 8.4e-06 53.1 45 55.6


User provided reference genes

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