Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1923.7 961 100.0
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1808.1 961 93.8
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1700.3 962 86.6
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1636.3 963 83.7
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1625.5 956 82.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1625.1 961 82.3
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1625.1 963 82.7
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1624.8 962 83.4
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1623.6 962 82.1
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1622.4 959 83.1
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1621.3 957 83.0
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1617.8 959 83.2
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1607.4 964 81.8
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1606.7 964 81.7
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1603.6 961 81.4
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 948 82.4
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 952 82.7
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 961 81.7
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1596.6 945 83.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1596.6 955 81.9
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1595.9 964 81.2
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1591.2 948 82.2
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1591.2 949 82.5
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1590.5 961 81.2
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1589.3 962 81.0
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1587.8 941 82.6
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1586.2 949 82.5
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1586.2 952 82.5
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1585.1 949 82.4
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1584.3 949 82.4
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1580.5 965 80.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1577.4 943 81.4
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 965 80.6
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 965 80.6
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 952 81.1
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 943 81.2
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 949 82.0
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1572.4 949 81.9
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1571.6 961 80.3
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1570.1 959 80.8
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 952 80.5
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1565.4 967 79.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 972 80.6
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 949 80.2
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1562.7 954 79.9
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 973 79.0
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 971 79.1
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 961 80.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 951 80.0
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 971 79.0
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 972 79.2
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 970 79.2
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 962 79.3
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 969 78.9
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 967 79.6
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1545.0 1001 77.4
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 969 78.7
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 961 78.3
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 961 77.9
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 962 78.6
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 961 78.0
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 949 79.0
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 961 77.8
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 944 79.6
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 971 78.1
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 973 77.4
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 970 77.5
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 954 77.8
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 961 77.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1518.8 944 79.3
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 942 79.6
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 951 77.6
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1510.0 964 78.0
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1508.8 950 78.3
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 958 78.2
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 954 78.1
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 943 77.7
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 943 77.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 960 77.6
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1494.6 951 77.7
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1494.6 946 78.0
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1493.8 956 77.1
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1492.2 956 77.0
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 943 77.3
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 944 77.9
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 944 77.8
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 954 76.3
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 946 77.4
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1482.6 965 76.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1482.6 944 77.5
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1482.6 944 77.5
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1479.2 946 76.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 944 77.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 945 77.2
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 969 74.3
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 946 76.5
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 969 76.2
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 943 76.5
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 951 74.8
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1454.9 958 74.8
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1452.2 953 76.2
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1448.3 943 74.1
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1410.6 951 73.1
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1392.1 832 82.0
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1367.8 959 70.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1352.4 941 71.3
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1319.3 958 70.1
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1315.8 847 77.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1314.7 855 76.7
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1229.2 736 80.8
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1222.2 964 65.4
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1198.3 998 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1194.9 962 61.4
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1146.0 704 79.5
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1123.6 1022 56.2
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1116.7 948 60.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1104.4 650 83.4
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1099.7 628 85.4
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.4e-282 975.3 715 67.8
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 3.9e-222 775.8 772 52.2
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.7e-217 760.4 464 80.2
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-185 654.4 443 73.6
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.8e-143 513.8 303 79.5
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 3.2e-115 420.6 1306 25.5
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.6e-114 416.8 638 39.7
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.9e-89 334.0 207 83.6
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 4.4e-80 303.9 202 74.8
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.7e-64 249.6 198 68.2
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.2e-60 238.4 125 93.6
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.3e-57 228.4 300 44.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 9.8e-48 196.4 134 70.1
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.6e-44 183.7 201 49.3
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 2.0e-40 172.2 139 64.7
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.2e-29 136.3 64 96.9
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 7.6e-16 90.5 80 62.5
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 4.9e-07 61.2 102 41.2
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 8.4e-07 60.5 45 66.7


User provided reference genes

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