Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.2e-151 538.9 263 100.0
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.3e-148 528.9 260 98.8
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.9e-143 511.9 260 95.4
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 5.1e-140 501.1 260 91.9
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 5.1e-140 501.1 260 91.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 8.4e-135 483.8 257 89.5
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 5.4e-134 481.1 258 88.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.2e-133 479.9 260 91.9
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.5e-133 478.4 258 88.0
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 6.0e-133 477.6 253 90.1
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-132 476.5 254 88.6
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-132 476.5 254 88.6
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 2.3e-132 475.7 259 88.8
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 3.0e-132 475.3 258 88.4
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 3.9e-132 474.9 261 87.4
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 5.1e-132 474.6 260 87.3
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 8.7e-132 473.8 259 88.4
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 2.5e-131 472.2 259 85.7
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.5e-131 472.2 258 87.6
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 3.3e-131 471.9 259 87.6
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 3.3e-131 471.9 258 86.8
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.3e-131 471.5 256 86.7
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 4.3e-131 471.5 258 88.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 4.3e-131 471.5 260 85.4
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 5.6e-131 471.1 259 88.8
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 5.6e-131 471.1 258 86.0
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 7.4e-131 470.7 258 87.2
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.3e-130 469.9 260 86.9
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.1e-130 469.2 260 86.9
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 2.1e-130 469.2 258 85.7
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 3.6e-130 468.4 258 85.7
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 4.8e-130 468.0 258 85.7
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 4.8e-130 468.0 258 86.0
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 4.8e-130 468.0 254 87.8
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 6.2e-130 467.6 258 87.2
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 8.1e-130 467.2 258 86.8
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 4.0e-129 464.9 260 84.6
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 4.0e-129 464.9 258 84.9
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 4.0e-129 464.9 258 84.9
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 5.3e-129 464.5 257 87.9
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 6.9e-129 464.2 260 84.6
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.2e-128 463.4 258 84.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.5e-128 463.0 261 87.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 2.0e-128 462.6 258 84.5
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.0e-128 462.6 258 86.8
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.6e-128 462.2 258 83.7
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 2.6e-128 462.2 258 84.9
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 4.5e-128 461.5 258 84.9
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 4.5e-128 461.5 265 84.9
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 5.8e-128 461.1 252 86.1
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.3e-127 459.9 260 82.7
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.3e-127 459.9 254 86.6
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.2e-127 459.1 258 83.7
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.2e-127 459.1 259 86.5
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 4.9e-127 458.0 259 85.3
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 4.9e-127 458.0 259 85.3
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 4.9e-127 458.0 258 84.5
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 4.9e-127 458.0 258 86.0
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.9e-126 456.1 259 84.2
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 3.2e-126 455.3 258 84.5
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 4.2e-126 454.9 258 84.9
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.1e-125 452.6 285 77.5
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.7e-125 452.2 257 83.7
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 6.0e-125 451.1 258 82.6
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.3e-124 449.1 271 81.9
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.9e-124 448.4 261 82.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.7e-124 447.2 261 81.6
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.5e-123 446.4 250 84.8
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.5e-123 445.7 258 83.3
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 4.3e-123 444.9 306 72.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.4e-120 435.3 260 81.9
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 7.6e-120 434.1 227 90.7
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 7.6e-120 434.1 260 79.6
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.0e-119 433.7 258 82.2
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 3.8e-119 431.8 255 79.6
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.1e-118 430.3 261 79.3
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 2.5e-118 429.1 260 78.8
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-118 428.3 263 79.1
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.2e-118 428.3 263 79.1
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-118 428.3 263 79.1
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 5.5e-118 427.9 263 78.7
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 7.1e-118 427.6 261 79.7
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-117 426.8 260 78.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-117 426.4 263 78.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-117 426.0 262 77.9
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 3.5e-117 425.2 260 78.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.5e-117 425.2 262 78.2
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 6.0e-117 424.5 262 77.5
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 7.9e-117 424.1 262 77.9
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.8e-116 422.9 260 77.7
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.0e-116 422.2 237 85.2
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-115 419.9 262 76.3
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 4.3e-115 418.3 262 76.3
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-114 416.8 262 76.3
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 2.8e-114 415.6 256 78.1
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 2.8e-114 415.6 253 78.3
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.1e-113 413.7 300 69.3
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 9.0e-113 410.6 264 77.3
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 2.0e-112 409.5 262 75.2
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.6e-112 409.1 263 76.4
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.4e-112 408.7 257 74.7
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.5e-112 408.3 258 73.6
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.9e-110 402.9 262 74.4
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 9.3e-110 400.6 237 82.3
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 9.3e-110 400.6 274 75.2
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 1.2e-109 400.2 256 74.2
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 3.6e-109 398.7 261 74.3
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.3e-106 390.2 259 70.3
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.6e-106 389.8 232 80.6
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-105 386.7 257 70.8
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.8e-105 386.3 257 70.4
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.7e-103 379.8 259 70.7
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.1e-102 377.1 280 71.1
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.4e-100 370.2 231 75.8
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.8e-100 369.8 258 71.3
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 7.4e-99 364.4 290 66.9
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.7e-98 363.2 199 84.9
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.8e-98 362.5 252 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 6.3e-98 361.3 257 66.9
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.1e-97 360.5 255 69.8
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.8e-97 359.8 256 70.7
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-96 357.1 240 72.5
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 3.8e-95 352.1 248 69.4
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 3.9e-92 342.0 247 65.2
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 3.3e-91 339.0 248 66.5
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 9.7e-91 337.4 245 66.5
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.3e-90 337.0 240 69.2
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 6.3e-90 334.7 245 66.5
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.4e-89 332.8 245 66.1
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 7.7e-88 327.8 258 60.1
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.0e-87 325.1 254 62.2
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-85 319.7 246 63.4
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 2.8e-82 309.3 247 61.1
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 6.3e-82 308.1 241 61.4
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 6.3e-82 308.1 241 61.4
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-81 307.4 236 63.6
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-81 306.6 247 60.7
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-81 306.6 247 60.7
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.4e-81 306.2 232 61.6
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 7.0e-81 304.7 236 62.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 7.0e-81 304.7 255 62.4
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-80 302.4 238 63.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-80 302.0 241 60.6
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-80 302.0 241 60.6
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-80 302.0 241 60.6
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-78 295.8 248 59.7
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.6e-77 293.5 250 58.4
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.8e-74 282.7 164 84.8
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.5e-72 275.8 268 58.2
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.3e-66 257.3 227 62.6
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.7e-66 255.8 237 55.3
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.7e-63 246.9 151 76.2
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.3e-63 246.5 248 52.8
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 3.8e-63 245.7 179 64.8
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-63 245.0 220 59.1
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 6.6e-63 245.0 249 53.4
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 8.6e-63 244.6 138 83.3
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 7.3e-62 241.5 151 75.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-61 240.4 259 52.5
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.9e-58 229.6 152 73.0
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.0e-55 221.1 247 49.8
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 6.6e-55 218.4 167 60.5
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.2e-51 207.6 254 45.3
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-50 203.8 237 46.8
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.7e-50 203.8 246 45.5
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 9.2e-49 198.0 202 50.5
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.6e-48 197.2 136 72.1
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 3.3e-46 189.5 241 42.3
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.2e-45 185.3 116 77.6
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 6.2e-45 185.3 107 81.3
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.1e-41 174.5 225 41.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 4.1e-41 172.6 107 76.6
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 7.1e-41 171.8 250 38.8
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.6e-40 169.1 248 42.3
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-37 161.0 120 67.5
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-33 147.1 83 84.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 6.0e-32 142.1 124 57.3
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.1e-30 137.9 77 77.9
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-22 110.9 90 54.4
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.5e-22 110.2 75 65.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.6e-22 109.0 97 56.7
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 1.4e-20 104.4 61 82.0
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-14 84.0 51 82.4
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-14 84.0 51 82.4
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.3e-14 82.8 51 80.4
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.3e-13 81.3 54 77.8
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-13 81.3 51 78.4


User provided reference genes

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