Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.7e-35 152.1 79 100.0
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 6.2e-25 117.1 64 93.8
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 2.4e-24 115.2 59 98.3
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 2.4e-24 115.2 59 98.3
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 5.8e-23 110.5 59 91.5
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 1.3e-22 109.4 59 93.2
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.3e-22 109.4 59 91.5
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 2.9e-22 108.2 59 88.1
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 2.9e-22 108.2 59 88.1
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 2.9e-22 108.2 59 88.1
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 3.8e-22 107.8 58 91.4
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 8.4e-22 106.7 59 86.4
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 5.4e-21 104.0 59 84.7
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 5.4e-21 104.0 59 84.7
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 7.1e-21 103.6 58 84.5
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 3.9e-19 97.8 59 81.4
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 1.5e-18 95.9 59 79.7
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 1.5e-18 95.9 59 79.7
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.9e-18 95.5 59 76.3
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 3.3e-18 94.7 59 74.6
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 5.6e-18 94.0 59 78.0
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 7.3e-18 93.6 62 74.2
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 9.6e-18 93.2 59 76.3
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.3e-17 92.8 57 78.9
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 1.6e-17 92.4 59 76.3
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 1.6e-17 92.4 57 77.2
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 76.3
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 76.3
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 76.3
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 74.6
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 71.2
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 71.2
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 71.2
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 2.8e-17 91.7 59 71.2
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 6.2e-17 90.5 59 74.6
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 8.1e-17 90.1 57 75.4
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 1.1e-16 89.7 59 71.2
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.1e-16 89.7 59 69.5
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 1.4e-16 89.4 59 69.5
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.8e-16 89.0 57 71.9
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 1.8e-16 89.0 57 71.9
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.8e-16 89.0 59 71.2
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 2.4e-16 88.6 59 76.3
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 2.4e-16 88.6 59 72.9
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 3.1e-16 88.2 59 69.5
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 3.1e-16 88.2 59 69.5
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 3.1e-16 88.2 59 71.2
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.3e-16 87.4 59 71.2
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.3e-16 87.4 59 71.2
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 5.3e-16 87.4 59 67.8
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 6.9e-16 87.0 58 67.2
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 6.9e-16 87.0 59 71.2
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 9.0e-16 86.7 59 71.2
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 9.0e-16 86.7 59 71.2
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.2e-15 86.3 76 60.5
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.2e-15 86.3 59 67.8
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.2e-15 86.3 57 70.2
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 1.5e-15 85.9 59 71.2
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 1.5e-15 85.9 59 66.1
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.5e-15 85.9 59 67.8
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 2.6e-15 85.1 57 70.2
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 2.6e-15 85.1 57 70.2
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 4.5e-15 84.3 59 67.8
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 4.5e-15 84.3 59 67.8
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 4.5e-15 84.3 59 69.5
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 4.5e-15 84.3 56 73.2
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 5.8e-15 84.0 57 64.9
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 5.8e-15 84.0 57 66.7
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 5.8e-15 84.0 57 66.7
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 5.8e-15 84.0 59 69.5
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 5.8e-15 84.0 59 69.5
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 5.8e-15 84.0 59 69.5
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 5.8e-15 84.0 59 69.5
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 7.6e-15 83.6 59 67.8
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 7.6e-15 83.6 59 67.8
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 9.9e-15 83.2 57 66.7
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 9.9e-15 83.2 57 68.4
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 9.9e-15 83.2 60 63.3
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 9.9e-15 83.2 59 66.1
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 9.9e-15 83.2 59 71.2
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 1.7e-14 82.4 57 66.7
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.7e-14 82.4 59 64.4
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.7e-14 82.4 57 70.2
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.2e-14 82.0 59 69.5
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 2.9e-14 81.6 57 63.2
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 3.8e-14 81.3 59 66.1
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 3.8e-14 81.3 59 66.1
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 4.9e-14 80.9 59 66.1
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 4.9e-14 80.9 59 62.7
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 1.1e-13 79.7 57 64.9
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.4e-13 79.3 54 68.5
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 1.4e-13 79.3 59 69.5
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 1.4e-13 79.3 57 63.2
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 1.4e-13 79.3 57 61.4
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 1.9e-13 79.0 57 61.4
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 1.9e-13 79.0 59 62.7
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 1.2e-12 76.3 57 54.4
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.2e-12 76.3 54 66.7
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 6.0e-12 73.9 69 52.2
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 6.0e-12 73.9 59 61.0
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 1.3e-11 72.8 57 50.9
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.3e-11 72.8 59 64.4
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.3e-11 72.8 59 64.4
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.3e-11 72.8 57 50.9
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 5.6e-10 67.4 52 69.2
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 2.1e-09 65.5 54 61.1
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.1e-09 65.5 56 55.4
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.7e-09 64.7 56 55.4
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 6.2e-09 63.9 58 56.9
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 6.2e-09 63.9 60 56.7
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 1.8e-08 62.4 58 56.9
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 5.3e-08 60.8 61 52.5
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 1.2e-07 59.7 40 67.5
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 2.6e-07 58.5 62 50.0
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.6e-07 58.5 71 45.1


User provided reference genes

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