Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005079g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.9e-99 365.9 192 100.0
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 6.6e-97 357.5 192 97.4
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.5e-96 356.3 192 96.9
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 9.0e-94 347.1 192 93.2
Nitab4.5_0028330g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.5e-93 346.3 192 96.9
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 2.3e-89 332.4 192 88.5
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 8.7e-89 330.5 192 88.5
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 4.3e-88 328.2 192 87.5
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 2.4e-86 322.4 192 87.0
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 6.9e-86 320.9 192 86.5
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 4.2e-83 311.6 192 84.9
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 2.3e-81 305.8 191 82.7
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 2.3e-81 305.8 192 79.7
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 8.7e-81 303.9 192 78.6
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 8.7e-81 303.9 192 78.6
Haze_01808 Corylus avellana HOM05D002001 ORTHO05D004100 1.1e-80 303.5 192 79.2
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 1.1e-80 303.5 192 81.2
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 1.5e-80 303.1 190 78.4
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 2.5e-80 302.4 192 78.1
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 2.5e-80 302.4 192 80.7
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 3.3e-80 302.0 191 82.2
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 3.3e-80 302.0 191 79.1
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 4.3e-80 301.6 192 78.6
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 4.3e-80 301.6 191 79.6
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 5.6e-80 301.2 192 80.7
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 7.4e-80 300.8 192 81.2
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 7.4e-80 300.8 192 78.1
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 7.4e-80 300.8 192 80.2
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 1.3e-79 300.1 192 78.1
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 2.8e-79 298.9 192 79.2
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 2.8e-79 298.9 192 78.1
Hma1.2p1_2522F.1_g323860 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 3.7e-79 298.5 192 81.8
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 4.8e-79 298.1 192 77.6
Hma1.2p1_2522F.1_g323890 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 4.8e-79 298.1 192 81.2
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 4.8e-79 298.1 192 78.1
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 6.2e-79 297.7 192 78.1
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 1.1e-78 297.0 191 77.5
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 1.4e-78 296.6 192 78.1
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 1.4e-78 296.6 195 79.5
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 1.8e-78 296.2 192 77.1
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 1.8e-78 296.2 191 79.1
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 1.8e-78 296.2 192 78.6
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 2.4e-78 295.8 192 78.6
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 3.1e-78 295.4 192 77.1
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 3.1e-78 295.4 188 79.8
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 9.0e-78 293.9 192 78.1
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 9.0e-78 293.9 192 77.6
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 1.2e-77 293.5 192 76.6
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 1.5e-77 293.1 190 77.4
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 1.5e-77 293.1 192 78.1
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 2.6e-77 292.4 190 77.4
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 3.4e-77 292.0 191 79.6
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 4.5e-77 291.6 190 75.8
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 4.5e-77 291.6 191 80.1
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 5.8e-77 291.2 192 76.0
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 7.6e-77 290.8 187 78.1
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 9.9e-77 290.4 191 74.9
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 9.9e-77 290.4 192 75.0
MELO3C027241.2 Cucumis melo HOM05D002001 ORTHO05D004100 1.3e-76 290.0 191 74.9
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.3e-76 290.0 192 76.0
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 1.7e-76 289.7 191 78.0
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 2.2e-76 289.3 191 74.3
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 2.2e-76 289.3 191 80.1
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 2.9e-76 288.9 192 76.6
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 3.8e-76 288.5 192 75.0
Prupe.I006200 Prunus persica HOM05D002001 ORTHO05D004100 6.4e-76 287.7 192 75.0
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 8.4e-76 287.3 190 74.7
Aa31LG2G9570 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.9e-75 286.2 191 75.4
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 1.9e-75 286.2 190 75.3
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 2.4e-75 285.8 192 76.0
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 3.2e-75 285.4 192 75.0
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 4.2e-75 285.0 192 75.5
Glyma.12G168900 Glycine max HOM05D002001 ORTHO05D004100 5.5e-75 284.6 190 75.3
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 7.1e-75 284.3 192 76.6
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 7.1e-75 284.3 192 75.0
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 1.2e-74 283.5 193 76.7
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 1.6e-74 283.1 189 75.1
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 2.1e-74 282.7 192 75.0
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 2.1e-74 282.7 192 75.0
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 2.7e-74 282.3 192 74.0
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 2.7e-74 282.3 193 77.7
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 2.7e-74 282.3 193 75.6
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 2.7e-74 282.3 190 74.2
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 3.5e-74 282.0 191 75.9
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 6.0e-74 281.2 191 75.9
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 6.0e-74 281.2 191 75.9
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 6.0e-74 281.2 191 75.9
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 6.0e-74 281.2 191 75.9
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 6.0e-74 281.2 191 75.9
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 6.0e-74 281.2 193 74.6
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 7.9e-74 280.8 192 75.0
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 1.3e-73 280.0 187 76.5
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 1.8e-73 279.6 193 74.1
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 3.9e-73 278.5 190 74.2
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 6.7e-73 277.7 192 71.9
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.7e-73 277.7 192 71.9
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.7e-73 277.7 192 71.9
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 6.7e-73 277.7 191 73.8
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 8.7e-73 277.3 192 71.4
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 1.1e-72 276.9 193 73.6
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 1.9e-72 276.2 193 73.1
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.9e-72 276.2 192 72.4
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.3e-72 275.4 192 71.4
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 4.3e-72 275.0 192 74.0
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 4.3e-72 275.0 190 72.6
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 5.6e-72 274.6 189 76.7
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 9.6e-72 273.9 192 76.0
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 2.8e-71 272.3 192 72.9
CiPaw.06G144600 Carya illinoinensis HOM05D002001 ORTHO05D004100 1.1e-70 270.4 171 78.9
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 3.4e-69 265.4 190 73.2
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 3.4e-69 265.4 188 71.3
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 7.6e-69 264.2 189 71.4
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 7.6e-69 264.2 192 74.0
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 3.8e-68 261.9 192 68.8
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 6.5e-68 261.2 192 71.4
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 9.3e-67 257.3 193 69.4
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 3.5e-66 255.4 193 67.9
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.0e-65 253.8 188 71.3
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 1.0e-65 253.8 192 70.8
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 2.3e-65 252.7 193 68.9
COL.COLO4_31914 Corchorus olitorius HOM05D002001 ORTHO05D004100 6.7e-65 251.1 170 74.7
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 6.7e-65 251.1 158 81.6
FAN06G3162 Fragaria x ananassa HOM05D002001 ORTHO05D004100 7.4e-64 247.7 193 68.4
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 2.8e-63 245.7 203 64.0
Aqoxy7G01151 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 2.4e-62 242.7 192 66.7
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 2.4e-62 242.7 192 66.7
FvH4_7g26770 Fragaria vesca HOM05D002001 ORTHO05D004100 3.1e-62 242.3 193 67.4
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.0e-61 239.6 165 72.7
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 5.9e-61 238.0 192 64.1
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 3.8e-60 235.3 192 62.5
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 8.5e-60 234.2 175 68.6
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 2.5e-59 232.6 192 63.0
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-57 226.1 157 72.6
BcaC02g10597 Brassica carinata HOM05D002001 ORTHO05D004100 4.1e-54 215.3 190 62.1
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 9.1e-54 214.2 190 58.9
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 1.2e-53 213.8 192 58.3
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 2.6e-53 212.6 190 58.9
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 2.9e-52 209.1 192 60.9
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 4.1e-46 188.7 118 84.7
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 1.2e-45 187.2 179 58.7
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 4.7e-42 175.3 186 50.0
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.4e-41 173.7 186 48.9
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 1.7e-39 166.8 109 78.9
FvH4_5g28761 Fragaria vesca HOM05D002001 ORTHO05D004100 2.4e-38 162.9 115 73.0
CSS0036640 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 4.1e-38 162.2 142 64.1
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 2.6e-37 159.5 191 42.4
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 2.6e-37 159.5 191 42.4
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 3.5e-37 159.1 98 77.6
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 8.5e-36 154.5 187 45.5
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 4.2e-35 152.1 188 46.3
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 1.6e-34 150.2 187 44.4
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 8.2e-31 137.9 190 38.9
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 5.3e-30 135.2 191 39.8
AagrBONN_evm.TU.Sc2ySwM_228.5774 Anthoceros agrestis HOM05D002001 ORTHO05D004100 5.9e-29 131.7 191 38.2
SEGI_30549 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.0e-25 120.9 146 45.9
BolC4t24247H Brassica oleracea HOM05D002001 ORTHO05D004100 2.4e-22 109.8 168 42.3
C04p25620 Brassica napus HOM05D002001 ORTHO05D004100 2.0e-16 90.1 115 47.8
C05p50850 Brassica napus HOM05D002001 ORTHO05D004100 5.7e-16 88.6 115 47.8
ECA246G0076 Erigeron canadensis HOM05D002001 ORTHO05D187146 2.8e-15 86.3 108 36.1
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 1.0e-12 77.8 203 26.6
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 1.5e-11 73.9 127 37.0
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 2.5e-11 73.2 214 31.8
AagrBONN_evm.TU.Sc2ySwM_344.448 Anthoceros agrestis HOM05D002001 ORTHO05D004100 6.1e-10 68.6 110 34.5
Medtr2g015350 Medicago truncatula HOM05D002001 ORTHO05D004100 4.0e-09 65.9 87 41.4
RcHm_v2.0_Chr1g0363271 Rosa chinensis HOM05D002001 ORTHO05D004100 4.1e-06 55.8 65 50.8


User provided reference genes

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