Gene: Pp3c6_3520

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c6_3520
  • Transcript Identifier Pp3c6_3520V3.1
  • Gene Type Coding gene
  • Location Chr06 : 2005268-2008905 : positive

Gene Family Information

  • ID HOM05D002001
  • #Genes/#Species 331/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c6_3520V3.1
  • pacid 32975935
  • alias Phypa_184823
  • alias Phpat.006G011900
  • alias Pp1s77_275V6
  • uniprot A9SGX1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006378
IBA
GOA DatabasemRNA polyadenylation
GO:0006398
IBA
GOA DatabasemRNA 3'-end processing by stem-loop binding and cleavage
GO:0016180
ISO
PLAZA Integrative OrthologysnRNA processing AT1G61010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0004521
IBA
GOA Databaseendoribonuclease activity
GO:0008409
IBA
GOA Database5'-3' exonuclease activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G61010

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005847
IBA
GOA DatabasemRNA cleavage and polyadenylation specificity factor complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022712 Beta-Casp domain
IPR001279 Metallo-beta-lactamase
IPR021718 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain
Mapman id Description
16.3.1.2.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.nuclease component CPSF73-I
16.3.2.1.5 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.nuclease component CPSF73-I