Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 0.0e+00 1174.5 636 100.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 0.0e+00 1082.0 596 91.8
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 7.4e-286 986.9 595 84.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 3.7e-285 984.6 593 84.5
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.7e-282 975.7 606 82.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.2e-281 971.5 598 82.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.2e-280 969.5 606 81.8
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 6.3e-277 957.2 604 82.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 9.5e-225 783.9 608 66.4
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.1e-224 782.7 605 66.1
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.0e-223 780.4 617 67.3
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.7e-221 773.1 612 65.4
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 4.1e-220 768.5 601 66.4
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.6e-219 766.5 608 65.1
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.7e-219 765.8 600 64.8
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.5e-217 760.0 615 64.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.6e-216 756.5 615 64.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 8.1e-216 754.2 614 64.3
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.8e-215 753.1 592 66.0
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.4e-214 748.8 623 63.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 7.5e-214 747.7 618 63.8
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.3e-213 746.9 631 63.1
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.9e-213 745.7 622 63.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.7e-213 745.3 614 64.0
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 8.3e-213 744.2 613 63.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 4.6e-211 738.4 619 63.2
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.3e-210 736.9 597 64.7
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.3e-209 732.3 590 64.9
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.3e-207 726.1 634 60.3
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.1e-207 725.7 615 61.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.4e-206 722.2 607 62.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.4e-206 722.2 597 62.3
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 5.8e-206 721.5 620 61.1
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 7.6e-206 721.1 597 62.6
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.9e-205 719.2 593 63.7
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 4.9e-205 718.4 617 60.9
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.9e-205 718.4 624 61.7
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.9e-204 716.5 603 62.2
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.4e-204 716.1 605 63.5
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.6e-203 713.4 617 61.8
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.1e-203 713.0 611 62.7
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.7e-203 712.6 595 61.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.6e-202 708.0 623 61.2
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 8.6e-202 707.6 596 61.1
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.6e-201 704.9 578 62.6
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.6e-200 702.2 610 61.8
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 8.1e-200 701.0 618 60.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.1e-199 699.1 633 60.7
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.0e-198 696.4 592 62.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.4e-198 695.7 626 60.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.9e-197 692.6 593 60.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.4e-197 691.4 599 61.9
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 8.4e-197 691.0 598 61.9
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.4e-196 689.5 626 61.2
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.4e-196 689.5 589 60.4
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.4e-196 688.3 623 59.9
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 9.3e-196 687.6 596 59.6
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 9.3e-196 687.6 610 59.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.3e-196 687.6 623 59.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 2.1e-195 686.4 601 59.1
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.1e-195 686.4 606 61.1
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.7e-195 686.0 606 61.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.7e-195 686.0 598 58.5
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.5e-195 685.6 623 59.7
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.5e-195 685.6 606 60.9
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 4.6e-195 685.3 596 59.7
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 4.6e-195 685.3 623 59.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.0e-195 684.9 624 59.5
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.0e-194 682.6 618 60.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-193 680.2 605 60.8
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 9.6e-193 677.6 589 61.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.8e-192 676.0 602 58.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-190 670.2 595 59.3
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 4.4e-190 668.7 602 60.6
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.3e-189 667.2 595 58.5
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.9e-189 666.0 624 59.1
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 3.8e-189 665.6 613 58.1
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.1e-188 664.1 595 58.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.1e-188 664.1 625 58.9
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.4e-188 661.8 610 58.5
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 9.3e-188 661.0 619 58.8
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.7e-186 656.8 595 57.1
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.3e-186 656.4 611 58.3
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.9e-185 653.3 593 58.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 9.6e-185 651.0 610 57.2
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 9.0e-183 644.4 611 58.3
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.4e-181 638.3 610 57.5
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 6.4e-181 638.3 610 57.5
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.4e-180 637.1 620 56.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-178 629.8 606 56.3
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.3e-177 625.5 609 56.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 9.6e-177 624.4 609 56.3
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 9.6e-177 624.4 609 56.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 9.6e-177 624.4 605 56.5
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.1e-176 621.3 607 55.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 8.1e-176 621.3 590 58.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-174 616.7 560 58.8
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 5.8e-174 615.1 612 55.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-173 613.6 609 55.8
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 3.8e-173 612.5 609 55.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 6.5e-173 611.7 606 56.1
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.6e-166 589.7 521 60.3
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.1e-163 580.1 610 55.7
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-162 577.8 608 53.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 5.1e-162 575.5 517 59.8
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.1e-161 574.3 620 53.2
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 4.8e-160 568.9 629 50.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.4e-159 567.4 616 53.1
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.4e-153 545.8 520 55.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.7e-152 543.9 613 48.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.0e-146 524.6 633 46.3
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.7e-144 517.3 455 60.4
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 9.1e-143 511.5 610 49.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.3e-141 507.7 527 52.9
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.9e-141 506.5 617 47.0
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.3e-136 491.1 453 59.2
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 6.3e-136 488.8 624 47.6
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 8.0e-123 445.3 522 48.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 9.8e-121 438.3 443 56.0
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 4.0e-114 416.4 528 47.0
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.3e-108 396.7 403 55.6
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.0e-106 391.7 336 60.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.2e-105 388.3 622 42.1
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-100 371.7 515 46.0
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-100 371.3 433 49.4
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 3.6e-99 366.7 630 38.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.2e-83 312.8 333 53.2
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.4e-82 310.8 277 58.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-82 310.8 397 48.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.6e-81 305.8 413 45.3
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.2e-80 304.3 606 36.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.8e-80 303.5 215 70.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 9.6e-76 288.9 242 62.0
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 8.1e-75 285.8 567 37.7
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 4.5e-65 253.4 774 30.1
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.2e-63 247.3 337 46.0
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 4.2e-63 246.9 337 46.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.7e-62 244.2 337 45.4
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 2.8e-59 234.2 201 57.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 6.2e-59 233.0 146 72.6
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 8.7e-45 186.0 543 30.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 6.3e-43 179.9 137 66.4
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 6.5e-40 169.9 579 28.3
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 4.7e-38 163.7 349 38.1
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 3.0e-37 161.0 533 30.0
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 3.3e-36 157.5 174 47.1
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.9e-32 144.4 275 39.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 7.2e-23 113.2 60 86.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 9.4e-23 112.8 82 68.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.0e-21 109.4 302 33.1
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 9.1e-18 96.3 79 59.5
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 7.5e-12 76.6 64 70.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 1.8e-10 72.0 39 84.6
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.0e-09 68.6 47 74.5
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 7.7e-09 66.6 60 60.0
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 5.0e-08 63.9 45 66.7


User provided reference genes

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