Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 0.0e+00 1182.2 644 100.0
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 8.8e-312 1073.2 596 91.8
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.9e-299 1030.4 595 87.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.5e-297 1025.8 593 88.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.7e-293 1012.3 594 85.7
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 9.1e-292 1006.5 594 85.4
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.2e-289 998.0 594 84.8
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.7e-283 978.4 593 85.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.6e-227 793.1 603 68.0
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.0e-226 790.4 610 69.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 2.0e-222 776.2 598 67.4
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 7.6e-222 774.2 592 68.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 8.4e-221 770.8 594 67.3
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 3.5e-219 765.4 598 66.1
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 7.9e-219 764.2 593 67.3
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 6.7e-218 761.1 598 66.4
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.8e-215 753.1 610 64.9
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 3.1e-215 752.3 591 67.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 4.0e-215 751.9 595 66.7
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.6e-214 749.2 602 65.8
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 3.4e-214 748.8 600 66.5
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 7.6e-214 747.7 596 65.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.7e-213 746.5 607 65.4
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.7e-213 746.5 599 65.3
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.1e-212 743.8 599 65.1
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.0e-210 737.3 601 65.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 8.7e-210 734.2 589 65.5
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.5e-209 732.6 593 63.7
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.3e-209 732.3 597 65.5
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.3e-209 732.3 597 63.7
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.8e-208 729.2 596 64.1
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 6.3e-208 728.0 598 63.5
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 6.3e-208 728.0 601 65.6
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 9.0e-207 724.2 596 64.8
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.0e-206 723.0 592 64.0
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 2.6e-206 722.6 596 63.9
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 5.0e-205 718.4 600 63.2
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 8.5e-205 717.6 594 64.3
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.5e-204 716.1 597 62.6
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 4.2e-204 715.3 607 63.6
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.6e-203 713.4 604 64.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.0e-202 710.7 598 63.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.9e-201 706.4 596 62.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.5e-201 706.1 579 63.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.3e-201 705.7 593 63.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 7.4e-201 704.5 609 63.5
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 9.7e-201 704.1 605 64.0
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 9.7e-201 704.1 601 63.4
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.8e-200 701.8 592 62.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.1e-199 700.7 596 63.8
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.6e-198 696.0 598 62.2
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.9e-198 694.9 595 63.7
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 5.9e-198 694.9 594 63.1
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.5e-197 691.0 595 61.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 8.5e-197 691.0 600 60.5
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.4e-196 690.3 591 61.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.2e-196 688.7 600 59.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.5e-196 688.3 595 61.3
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 9.4e-196 687.6 605 62.1
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.6e-195 686.8 599 61.3
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.7e-195 686.0 593 60.5
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.7e-195 685.3 597 60.5
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.7e-195 685.3 599 61.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.0e-194 684.1 599 61.3
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-194 684.1 600 61.2
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-194 684.1 599 61.1
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-194 682.9 597 61.8
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.6e-193 679.5 598 61.9
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 5.7e-193 678.3 597 62.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.7e-192 676.8 604 59.4
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.2e-192 676.4 590 61.5
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.7e-192 675.6 594 61.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.4e-191 672.9 595 60.7
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 4.5e-190 668.7 598 61.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.2e-189 666.4 602 60.6
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.8e-189 665.6 595 59.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.9e-188 663.3 614 58.6
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 7.2e-188 661.4 598 62.2
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.2e-187 660.6 596 62.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.7e-187 659.4 595 58.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.6e-187 659.1 598 60.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.7e-187 658.7 594 59.8
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.0e-186 657.5 601 58.4
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 6.7e-186 654.8 603 59.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 8.2e-184 647.9 596 59.1
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.2e-182 644.0 595 58.2
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.2e-182 644.0 593 59.0
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.2e-182 644.0 593 59.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.6e-182 643.7 597 59.6
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.8e-178 630.2 592 57.6
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.4e-177 625.5 597 57.1
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 9.7e-177 624.4 597 57.1
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 9.7e-177 624.4 597 57.1
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.2e-174 617.5 599 57.9
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 3.5e-174 615.9 585 59.1
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.0e-173 614.4 597 56.6
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-173 614.4 555 59.6
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.0e-173 614.4 597 56.4
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-173 613.6 596 56.2
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.2e-173 613.2 597 56.4
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-172 610.9 592 56.2
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 7.0e-167 591.7 518 62.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.2e-163 580.9 513 61.4
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 4.4e-161 572.4 599 53.4
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 8.3e-160 568.2 594 53.2
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 8.3e-160 568.2 593 53.8
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.1e-159 567.8 594 54.5
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.0e-158 563.5 611 50.9
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 8.9e-154 548.1 520 56.9
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.4e-151 540.0 455 63.1
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.4e-151 540.0 599 50.1
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.5e-148 530.0 633 48.2
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.7e-141 507.3 596 49.3
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-141 506.1 596 50.0
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.3e-140 501.9 527 52.6
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 3.6e-139 499.6 457 60.2
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.9e-136 489.2 604 48.3
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.6e-121 440.3 520 49.0
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.3e-120 438.0 444 57.0
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.2e-110 404.8 528 48.1
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 3.0e-109 400.2 336 62.8
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.0e-109 400.2 401 57.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 7.6e-105 385.6 624 41.8
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.9e-101 373.2 514 47.1
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.3e-99 368.2 431 50.1
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.5e-97 361.3 635 38.7
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.1e-82 312.0 275 60.0
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-82 312.0 395 48.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-82 310.8 385 48.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.5e-81 308.1 592 37.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.3e-80 305.1 413 45.0
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.2e-79 300.4 215 70.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.4e-74 285.0 242 61.2
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.2e-70 271.9 567 35.4
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 7.4e-68 262.7 766 31.5
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-62 245.0 341 45.2
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.8e-61 241.5 341 44.6
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 5.2e-61 240.0 373 43.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 5.7e-60 236.5 146 74.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 4.1e-58 230.3 201 57.2
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.4e-42 178.7 541 28.7
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.7e-41 174.5 123 69.1
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.9e-40 171.0 579 28.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 9.5e-39 166.0 402 36.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.0e-37 162.5 525 29.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 5.8e-36 156.8 165 49.1
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 7.3e-31 139.8 275 39.3
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 6.2e-22 110.2 82 65.9
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 8.1e-22 109.8 60 85.0
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 2.6e-20 104.8 247 34.8
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.9e-18 98.6 79 62.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.4e-12 77.8 80 62.5
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 2.4e-10 71.6 39 84.6
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 7.8e-09 66.6 60 60.0
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 3.0e-08 64.7 45 68.9
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 6.6e-08 63.5 94 48.9


User provided reference genes

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