Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.3e-85 318.9 172 100.0
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 6.0e-57 224.6 145 86.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 3.0e-40 169.1 176 56.8
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.9e-40 168.7 182 56.6
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 6.7e-40 167.9 168 58.9
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.7e-38 162.2 157 65.6
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.1e-37 160.6 175 55.4
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 2.9e-35 152.5 155 61.9
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 8.4e-35 151.0 155 61.3
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 9.3e-34 147.5 152 59.9
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.5e-33 145.6 184 51.1
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 3.5e-33 145.6 178 51.1
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 4.6e-33 145.2 178 49.4
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.8e-32 143.3 185 50.3
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.1e-31 140.6 178 48.9
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.9e-31 139.8 183 47.0
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.3e-30 137.1 179 48.6
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.1e-29 132.5 183 45.4
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.2e-28 130.6 174 47.1
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.5e-28 128.6 159 50.3
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 4.5e-28 128.6 171 49.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 5.9e-28 128.3 173 47.4
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 7.6e-28 127.9 164 50.0
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 7.6e-28 127.9 168 47.6
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.0e-27 127.5 161 49.1
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.3e-27 127.1 178 45.5
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.3e-27 127.1 161 49.1
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.2e-27 126.3 165 48.5
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.8e-27 125.6 165 47.9
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.8e-27 125.6 165 47.9
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.0e-27 125.2 174 47.1
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 5.0e-27 125.2 159 47.8
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.0e-27 125.2 152 55.3
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 6.5e-27 124.8 165 47.9
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 6.5e-27 124.8 171 48.5
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 8.5e-27 124.4 164 48.8
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.9e-26 123.2 165 47.3
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.9e-26 123.2 170 46.5
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.5e-26 122.9 174 46.6
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.5e-26 122.9 153 45.8
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.2e-26 122.5 173 45.1
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 3.2e-26 122.5 176 44.9
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.2e-26 122.1 178 43.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 4.2e-26 122.1 168 46.4
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 5.5e-26 121.7 159 48.4
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 9.3e-26 120.9 181 43.6
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.6e-25 120.2 161 47.8
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.7e-25 119.4 169 45.6
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 6.1e-25 118.2 170 45.3
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 7.9e-25 117.9 175 43.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.3e-24 116.3 182 45.1
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.3e-24 116.3 182 45.1
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.3e-24 116.3 162 44.4
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 3.0e-24 115.9 167 47.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 3.0e-24 115.9 163 46.0
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 3.9e-24 115.5 181 42.5
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.9e-24 115.5 182 45.1
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 5.1e-24 115.2 175 44.0
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 6.7e-24 114.8 175 45.7
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 8.7e-24 114.4 171 43.3
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-23 114.0 174 43.7
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.5e-23 113.6 164 45.1
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 2.5e-23 112.8 165 45.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.5e-23 112.8 168 46.4
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 3.3e-23 112.5 163 44.8
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.3e-23 112.5 153 43.8
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 5.7e-23 111.7 177 45.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.7e-22 110.2 173 42.8
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-22 110.2 155 50.3
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 4.8e-22 108.6 165 44.8
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 4.8e-22 108.6 171 41.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.8e-22 108.6 153 43.1
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.1e-21 107.5 172 42.4
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.1e-21 107.5 170 44.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.4e-21 107.1 168 44.6
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.8e-21 106.7 174 40.2
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 2.4e-21 106.3 172 42.4
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.4e-21 106.3 168 44.6
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.1e-21 105.9 177 42.9
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 6.9e-21 104.8 74 71.6
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 6.9e-21 104.8 74 71.6
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 9.1e-21 104.4 170 42.4
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.2e-20 104.0 176 40.9
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.5e-20 103.6 82 64.6
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 7.7e-20 101.3 75 68.0
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.7e-20 101.3 152 50.7
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.0e-19 100.9 75 68.0
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.0e-19 100.9 75 68.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.3e-19 100.5 75 68.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.3e-19 100.5 170 42.9
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 3.8e-19 99.0 178 41.0
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.8e-19 99.0 178 41.0
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 5.0e-19 98.6 75 68.0
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 5.0e-19 98.6 153 42.5
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 6.5e-19 98.2 172 41.3
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 6.5e-19 98.2 162 42.6
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 8.5e-19 97.8 64 75.0
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.1e-18 97.4 75 64.0
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.4e-18 97.1 65 73.8
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.9e-18 96.7 153 41.8
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.9e-18 96.7 153 43.1
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 2.5e-18 96.3 162 40.7
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 3.2e-18 95.9 161 41.0
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 4.2e-18 95.5 161 41.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 4.2e-18 95.5 184 38.6
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.2e-17 94.0 178 39.3
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.6e-17 93.6 153 42.5
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.1e-17 93.2 162 40.1
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 4.7e-17 92.0 170 38.8
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 7.9e-17 91.3 176 36.9
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.0e-16 89.4 167 39.5
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 6.7e-16 88.2 153 40.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.1e-15 87.4 157 38.9
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.1e-15 87.4 189 36.5
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.6e-15 86.3 178 38.2
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 2.6e-15 86.3 142 43.0
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.3e-15 85.9 178 38.2
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.8e-13 80.1 158 36.7
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 4.5e-12 75.5 165 36.4
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.0e-11 74.3 165 34.5
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 3.8e-11 72.4 152 37.5
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 8.8e-08 61.2 39 74.4
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 9.7e-07 57.8 85 48.2


User provided reference genes

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