Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003532g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 0.0e+00 1300.8 655 100.0
Nitab4.5_0004240g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 0.0e+00 1280.8 655 98.3
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 0.0e+00 1234.2 655 93.1
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 0.0e+00 1233.4 655 93.3
Peaxi162Scf00544g00920 Petunia axillaris HOM05D003289 ORTHO05D004594 0.0e+00 1175.2 656 89.2
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 0.0e+00 1109.7 665 82.9
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1099.0 666 81.8
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 0.0e+00 1095.5 665 81.7
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 0.0e+00 1093.6 665 82.3
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 0.0e+00 1092.8 666 81.8
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 0.0e+00 1088.6 664 82.1
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 0.0e+00 1087.4 667 82.2
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 0.0e+00 1086.6 659 81.0
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 0.0e+00 1079.3 666 81.8
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 0.0e+00 1078.2 667 80.4
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 0.0e+00 1077.8 665 80.0
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 0.0e+00 1076.6 661 80.6
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 4.5e-312 1074.3 664 81.3
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 4.0e-311 1070.8 662 81.3
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 2.0e-310 1068.5 662 80.1
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 2.6e-310 1068.1 671 79.4
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 3.4e-310 1067.8 663 80.1
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 4.4e-310 1067.4 663 80.5
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 9.9e-310 1066.2 655 79.8
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 1.7e-309 1065.4 662 79.9
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 2.2e-309 1065.1 675 79.1
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 3.7e-309 1064.3 664 79.4
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 3.7e-309 1064.3 664 79.8
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 4.9e-309 1063.9 727 75.1
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 6.4e-309 1063.5 653 80.6
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 1.1e-308 1062.8 664 79.4
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 2.4e-308 1061.6 661 80.6
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 4.1e-308 1060.8 665 78.8
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 9.2e-308 1059.7 666 79.4
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 9.2e-308 1059.7 663 79.2
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 1.2e-307 1059.3 660 79.2
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 2.1e-307 1058.5 664 79.4
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 3.5e-307 1057.7 659 79.1
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 7.8e-307 1056.6 663 79.2
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 1.3e-306 1055.8 663 79.6
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 3.9e-306 1054.3 663 80.1
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 5.1e-306 1053.9 663 79.5
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 8.6e-306 1053.1 662 79.8
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 1.1e-305 1052.7 658 79.8
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 1.1e-305 1052.7 655 80.0
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.5e-305 1051.6 661 79.4
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 4.3e-305 1050.8 674 78.0
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 7.3e-305 1050.0 711 75.0
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 7.3e-305 1050.0 663 79.2
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 2.1e-304 1048.5 661 79.1
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 4.7e-304 1047.3 665 80.0
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 3.1e-303 1044.6 687 76.7
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 3.1e-303 1044.6 681 77.5
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 5.2e-303 1043.9 663 78.4
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 6.8e-303 1043.5 666 77.9
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 1.5e-302 1042.3 665 78.5
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 1.5e-302 1042.3 661 79.4
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 2.0e-302 1042.0 662 79.0
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 2.0e-302 1042.0 666 78.7
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 5.8e-302 1040.4 656 78.5
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 1.3e-301 1039.3 673 78.2
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.1e-300 1036.2 662 79.2
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 9.3e-300 1033.1 659 78.8
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 2.1e-299 1031.9 656 77.6
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 6.0e-299 1030.4 656 78.5
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 7.8e-299 1030.0 659 77.7
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.3e-298 1029.2 656 77.6
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 7.3e-297 1023.5 657 77.0
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 2.1e-296 1021.9 663 77.1
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 2.1e-296 1021.9 687 75.8
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 8.1e-296 1020.0 656 78.0
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 1.1e-295 1019.6 663 77.2
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 1.1e-295 1019.6 663 77.2
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 4.0e-295 1017.7 657 77.3
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 2.0e-294 1015.4 664 77.0
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 7.6e-294 1013.4 663 76.5
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 2.7e-291 1005.0 657 76.0
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 4.6e-291 1004.2 656 75.5
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 2.3e-290 1001.9 661 76.2
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 1.1e-289 999.6 656 75.5
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 3.4e-286 988.0 661 75.8
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 2.9e-285 984.9 627 78.9
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 1.4e-284 982.6 662 76.4
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 9.3e-284 979.9 655 76.6
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 4.6e-283 977.6 663 75.1
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 7.9e-283 976.9 663 75.0
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 1.8e-282 975.7 657 74.6
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 4.9e-277 957.6 651 74.7
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.5e-276 955.3 656 73.3
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 9.3e-276 953.4 666 73.3
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.6e-275 951.0 684 70.9
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 6.0e-275 950.7 655 74.8
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 1.8e-274 949.1 556 84.9
Ah.08g215940 Amaranthus hybridus HOM05D003289 ORTHO05D004594 2.8e-272 941.8 509 89.4
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 1.5e-270 936.0 657 69.9
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 1.9e-265 919.1 655 72.8
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 2.5e-265 918.7 661 70.8
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 9.0e-263 910.2 666 71.0
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 3.4e-262 908.3 670 68.7
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.7e-259 898.7 661 70.3
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 6.5e-253 877.5 656 67.8
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 2.3e-242 842.4 454 89.6
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 6.1e-235 817.8 546 76.4
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 9.1e-231 803.9 483 81.6
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 1.4e-226 790.0 655 64.7
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 3.5e-214 748.8 554 72.0
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 1.2e-211 740.3 713 56.1
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 4.4e-201 705.3 660 53.9
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 2.2e-184 649.8 658 51.7
COL.COLO4_06999 Corchorus olitorius HOM05D003289 ORTHO05D004594 2.5e-172 609.8 511 64.6
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 7.2e-151 538.5 602 48.5
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 8.5e-136 488.4 379 65.4
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 4.5e-121 439.5 240 86.2
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 6.5e-120 435.6 229 92.1
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.6e-118 431.0 240 82.9
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 7.7e-105 385.6 212 89.6
CDE02G3272 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.5e-84 318.2 173 90.8
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.6e-76 290.8 229 67.7
PSO782G5595 Papaver somniferum HOM05D003289 ORTHO05D004594 4.0e-69 266.9 151 88.1
Glyma.18G157402 Glycine max HOM05D003289 ORTHO05D004594 5.8e-68 263.1 134 92.5
Glyma.13G033700 Glycine max HOM05D003289 ORTHO05D004594 1.9e-66 258.1 134 91.0
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 8.4e-59 232.6 218 59.6
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 2.4e-58 231.1 227 55.5
Cpa.g.sc32.132 Carica papaya HOM05D003289 ORTHO05D004594 2.0e-52 211.5 151 65.6
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 3.8e-51 207.2 120 79.2
Phvul.003G000400 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.1e-50 205.7 155 71.0
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 3.3e-47 194.1 112 78.6
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 7.4e-47 193.0 142 67.6
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 4.8e-46 190.3 142 66.9
CANSAT25G1376 Cannabis sativa HOM05D003289 ORTHO05D004594 4.6e-41 173.7 88 89.8
arahy.Tifrunner.gnm1.ann1.183PB6 Arachis hypogaea HOM05D003289 ORTHO05D004594 6.9e-37 159.8 205 46.3
Zm00001eb359770 Zea mays HOM05D001145 ORTHO05D001415 2.7e-33 147.9 210 46.2
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 6.1e-33 146.7 96 69.8
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 7.9e-33 146.4 93 69.9
MBI06_g41845_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 1.1e-31 142.5 231 40.3
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 1.1e-26 125.9 83 65.1
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 3.0e-24 117.9 142 49.3
HPP92_025207 Vanilla planifolia HOM05D003289 ORTHO05D004594 1.8e-16 92.0 124 47.6
arahy.Tifrunner.gnm1.ann1.98W5WM Arachis hypogaea HOM05D003289 ORTHO05D016559 2.3e-16 91.7 44 86.4
arahy.Tifrunner.gnm1.ann1.GG4XIK Arachis hypogaea HOM05D003289 ORTHO05D018396 3.7e-14 84.3 56 67.9
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 9.1e-13 79.7 39 84.6
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 2.0e-12 78.6 40 95.0
MBI03_g27157_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 6.5e-11 73.6 41 80.5
QL02p053678 Quercus lobata HOM05D001043 ORTHO05D014299 2.5e-10 71.6 40 77.5
Lsat_1_v5_gn_8_25040 Lactuca sativa HOM05D003289 ORTHO05D231847 1.2e-09 69.3 57 64.9
Pp3c18_14020 Physcomitrium patens HOM05D003289 ORTHO05D004594 2.1e-09 68.6 117 40.2
arahy.Tifrunner.gnm1.ann1.1QTR5T Arachis hypogaea HOM05D003289 ORTHO05D084552 3.6e-09 67.8 40 77.5
arahy.Tifrunner.gnm1.ann1.JQS2KP Arachis hypogaea HOM05D003289 ORTHO05D023760 3.6e-09 67.8 40 80.0
arahy.Tifrunner.gnm1.ann1.P7LCTL Arachis hypogaea HOM05D000168 ORTHO05D086928 8.0e-09 66.6 36 88.9
MBI06_g01164_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D023760 4.0e-08 64.3 55 60.0
MBI15_g28591_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D023760 3.7e-06 57.8 35 80.0


User provided reference genes

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