Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.3e-85 318.9 170 100.0
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.7e-56 223.0 145 86.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 6.0e-33 144.8 159 57.2
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 3.0e-32 142.5 162 56.8
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.9e-32 142.1 174 55.2
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.9e-31 139.8 162 58.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 9.5e-31 137.5 158 55.7
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.2e-30 137.1 172 52.9
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.6e-30 136.7 172 52.9
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 2.4e-26 122.9 144 54.9
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 6.0e-25 118.2 161 51.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 7.8e-25 117.9 162 48.1
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.3e-24 117.1 161 50.9
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.9e-24 115.5 168 49.4
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 3.9e-24 115.5 161 50.9
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.6e-23 110.9 166 45.8
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 6.2e-22 108.2 161 47.2
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.1e-21 107.5 144 54.9
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.4e-21 106.3 166 44.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 4.0e-21 105.5 153 46.4
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 8.9e-21 104.4 152 48.0
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.2e-20 104.0 156 46.8
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.2e-20 104.0 153 46.4
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.0e-20 103.2 157 46.5
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.6e-20 102.8 157 45.9
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 4.4e-20 102.1 151 46.4
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 7.6e-20 101.3 151 47.0
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 9.9e-20 100.9 157 42.7
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 9.9e-20 100.9 160 45.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.3e-19 100.5 161 46.0
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.3e-19 100.5 165 43.6
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.3e-19 100.5 157 47.1
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.2e-19 99.8 146 46.6
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 2.2e-19 99.8 157 45.2
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.2e-19 99.8 163 45.4
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.8e-19 99.0 157 46.5
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.8e-19 99.0 157 46.5
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.8e-19 99.0 160 43.1
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.9e-19 98.6 161 42.9
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 6.4e-19 98.2 153 45.1
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 6.4e-19 98.2 153 46.4
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 8.4e-19 97.8 157 45.2
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.1e-18 97.4 151 45.0
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-18 97.4 154 46.8
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.2e-18 95.9 180 41.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.2e-18 95.9 166 41.6
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.2e-18 95.9 159 44.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 5.4e-18 95.1 161 42.9
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.2e-17 94.0 145 43.4
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.6e-17 93.6 164 42.1
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.6e-17 93.6 186 41.9
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.6e-17 93.6 144 48.6
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.1e-17 93.2 167 43.7
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 2.1e-17 93.2 162 42.6
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.1e-17 93.2 155 43.9
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.7e-17 92.8 167 41.3
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 2.7e-17 92.8 159 42.8
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 3.5e-17 92.4 145 45.5
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 4.6e-17 92.0 167 43.1
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 4.6e-17 92.0 167 43.1
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.0e-16 90.9 167 43.1
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.0e-16 90.9 155 42.6
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.7e-16 90.1 156 41.7
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.7e-16 90.1 60 78.3
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.7e-16 90.1 144 41.0
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.3e-16 89.7 186 40.9
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 3.0e-16 89.4 159 42.8
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.0e-16 89.4 160 44.4
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 8.7e-16 87.8 182 38.5
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 8.7e-16 87.8 57 78.9
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 8.7e-16 87.8 57 78.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.5e-15 87.0 81 60.5
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.5e-15 87.0 81 60.5
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-15 87.0 157 42.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.9e-15 86.7 57 77.2
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.9e-15 86.7 81 59.3
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 2.5e-15 86.3 154 41.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.3e-15 85.9 163 41.1
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.3e-15 85.9 160 43.8
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 4.3e-15 85.5 156 42.3
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.6e-15 85.1 144 38.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 7.3e-15 84.7 81 59.3
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 7.3e-15 84.7 58 74.1
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 7.3e-15 84.7 58 72.4
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 7.3e-15 84.7 58 72.4
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.3e-14 84.0 180 38.3
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.6e-14 83.6 153 42.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.6e-14 83.6 56 73.2
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.6e-14 83.6 58 70.7
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.6e-14 83.6 166 36.7
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 2.8e-14 82.8 162 39.5
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 2.8e-14 82.8 160 40.6
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 4.8e-14 82.0 157 41.4
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.2e-14 81.6 57 71.9
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.1e-14 81.3 144 44.4
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.1e-13 80.9 165 40.6
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.4e-13 80.5 153 41.2
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.4e-13 79.7 160 38.8
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 4.0e-13 79.0 161 41.6
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.0e-13 79.0 161 41.6
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 4.0e-13 79.0 153 35.9
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 6.9e-13 78.2 144 38.9
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.2e-12 77.4 162 38.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.2e-12 77.4 145 39.3
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.5e-12 77.0 157 38.2
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.6e-12 76.3 144 38.2
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 3.4e-12 75.9 137 43.1
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.9e-12 74.3 161 39.8
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 9.9e-12 74.3 145 38.6
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.7e-11 73.6 154 37.0
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.2e-11 73.2 157 37.6
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.9e-11 72.8 146 39.7
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 6.4e-11 71.6 152 38.2
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 8.4e-11 71.2 154 37.0
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.4e-10 70.5 149 36.9
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.2e-09 67.4 182 31.9
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.2e-09 67.4 144 36.8
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 3.5e-09 65.9 185 31.9
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 7.9e-09 64.7 146 37.0
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 9.6e-07 57.8 152 32.2


User provided reference genes

Program Settings