Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 3280.3 1710 100.0
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2921.3 1685 92.0
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2799.2 1702 86.8
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2792.7 1702 86.0
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2785.7 1703 85.1
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2569.3 1625 84.2
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2202.9 1638 70.3
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2161.3 1717 67.8
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2154.8 1666 68.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2105.5 1709 65.0
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2105.1 1710 64.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2098.2 1733 64.9
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2080.8 1669 65.8
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2073.5 1733 64.5
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2067.4 1740 64.2
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2066.6 1722 64.6
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2066.2 1661 66.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2064.3 1719 64.7
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2062.3 1683 64.7
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2062.0 1657 65.8
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2047.3 1734 62.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2032.3 1726 63.8
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2030.4 1691 63.9
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2025.8 1665 65.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2010.0 1739 62.5
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2003.4 1726 62.1
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2001.1 1730 62.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1998.8 1694 62.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1998.4 1670 63.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1992.2 1682 63.5
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1992.2 1791 60.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1979.1 1731 61.9
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1978.8 1684 62.8
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1974.9 1705 62.9
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1973.7 1737 61.5
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1964.9 1723 60.9
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1962.2 1686 62.6
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1961.8 1686 62.6
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1961.0 1740 61.4
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1960.3 1691 62.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1956.0 1686 62.5
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1952.2 1732 61.4
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1950.3 1687 62.3
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1948.7 1690 62.0
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1937.2 1742 61.4
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1936.4 1707 60.8
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1936.4 1737 60.4
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1933.3 1507 68.1
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1917.5 1735 59.9
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1917.5 1705 60.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1916.0 1781 59.3
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1905.6 1658 60.8
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1905.6 1686 61.4
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1904.8 1738 60.0
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1900.2 1727 59.1
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1894.4 1660 61.1
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1893.6 1747 59.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1893.2 1658 61.1
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1884.4 1743 59.3
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1882.5 1736 58.9
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1880.9 1790 58.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1880.1 1723 58.3
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1874.0 1693 59.7
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1849.3 1672 59.4
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1842.0 1571 62.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1840.1 1739 58.0
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1835.8 1719 58.1
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1832.0 1509 64.5
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1831.6 1613 60.2
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1826.6 1541 63.4
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1814.3 1632 58.6
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1812.0 1626 58.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1812.0 1626 58.9
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1809.3 1619 59.7
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1809.3 1499 63.8
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1807.3 1618 59.1
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1804.6 1462 66.0
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1801.2 1666 59.1
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1794.6 1626 58.9
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1793.5 1624 58.7
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1790.0 1623 58.7
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1790.0 1623 58.7
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1785.4 1625 58.5
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1779.2 1604 59.0
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1766.5 1609 59.0
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1765.4 1747 58.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1736.9 1788 54.5
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1662.9 1799 53.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1632.8 1613 55.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1617.4 1468 58.7
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1594.7 1354 63.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1568.1 1594 54.7
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1556.6 1606 53.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1395.9 1316 57.7
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1377.8 1595 48.1
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1275.0 1561 46.1
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1264.2 1682 44.0
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1260.0 1639 45.0
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1231.9 937 70.2
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1220.3 949 68.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 5.0e-305 1052.0 933 60.0
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-301 1040.8 930 60.5
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.9e-298 1028.5 1096 50.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.2e-279 967.6 904 58.6
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.1e-279 966.8 1514 39.5
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 3.4e-245 853.2 648 67.4
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.2e-219 766.5 722 56.4
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.6e-210 736.9 477 80.1
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 9.2e-182 642.5 579 59.6
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.1e-165 588.2 496 63.7
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.3e-163 580.9 823 42.9
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 2.0e-152 545.0 512 58.0
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.1e-140 503.8 484 59.3
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 4.8e-138 497.3 433 60.3
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.3e-132 478.4 667 42.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 6.7e-132 476.9 562 50.7
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.0e-129 467.6 502 51.8
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.1e-118 433.0 435 55.4
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.0e-111 407.5 454 52.9
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.2e-98 363.6 323 58.2
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.6e-96 359.4 282 64.5
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.9e-96 357.5 357 54.1
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-93 349.7 327 56.9
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.4e-89 336.3 425 47.1
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 7.0e-89 334.0 272 68.0
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 4.1e-81 308.1 348 50.9
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.4e-76 293.1 1559 23.5
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 8.9e-76 290.4 319 53.9
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 2.4e-49 202.6 117 81.2
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.2e-49 202.2 218 51.4
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 7.3e-46 191.0 120 75.0
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.4e-41 176.8 569 27.4
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.3e-39 170.2 173 52.6
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.2e-35 157.1 143 56.6
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.3e-34 153.7 416 31.2
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.4e-33 148.3 250 40.4
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.6e-32 146.7 200 45.5
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.9e-31 142.1 108 60.2
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.9e-30 139.8 143 49.7
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 4.5e-27 128.6 95 66.3
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.7e-26 126.7 70 87.1
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.6e-24 120.2 78 71.8
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 3.5e-24 119.0 101 64.4
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 6.0e-24 118.2 93 63.4
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.0e-23 115.9 140 46.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.6e-21 110.2 78 70.5
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 4.8e-21 108.6 94 60.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.0e-19 103.2 71 73.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.9e-18 98.6 92 64.1
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 9.3e-17 94.4 173 34.7
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 6.0e-16 91.7 68 69.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.9e-15 89.0 48 87.5
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.1e-14 87.4 48 85.4
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.1e-13 83.2 61 68.9
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 9.0e-12 77.8 73 52.1
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 1.0e-10 74.3 53 69.8
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 6.5e-10 71.6 154 29.9
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.5e-09 69.7 117 34.2
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.7e-08 66.2 98 40.8
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 7.9e-08 64.7 93 40.9


User provided reference genes

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