Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1899.4 955 100.0
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1836.6 955 96.5
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1802.3 955 94.9
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1798.1 955 94.3
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1786.2 955 93.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1782.3 955 93.8
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1723.0 953 91.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1634.0 963 84.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1601.3 954 83.3
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1595.9 957 82.8
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1585.5 958 81.8
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1583.5 958 81.7
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 965 81.8
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1578.5 955 82.4
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1577.0 961 82.2
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 959 81.1
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 966 81.9
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 964 81.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 946 82.1
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1573.1 958 81.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1571.2 962 80.8
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1571.2 962 80.8
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 962 80.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 958 81.3
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1565.4 961 80.6
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1565.1 961 80.1
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 958 80.5
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 955 81.3
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 939 82.1
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 958 81.3
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 948 81.1
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 948 81.6
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 961 79.9
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 952 80.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 950 80.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 944 80.9
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1546.9 944 80.8
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 942 81.3
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1545.0 937 81.5
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 941 81.2
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 962 79.3
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 948 80.3
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1538.5 957 79.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 941 80.9
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1535.0 941 80.6
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1535.0 953 79.7
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1534.6 961 79.7
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1534.6 956 80.2
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 954 79.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1531.5 948 80.6
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 962 80.1
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 972 78.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 942 80.4
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 965 78.4
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 972 78.4
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 968 80.0
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 966 78.5
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1523.1 960 78.1
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 965 78.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 972 78.3
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 972 77.7
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 971 78.2
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1514.2 964 78.2
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 968 77.7
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 968 77.7
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 958 79.1
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 968 77.3
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 963 78.2
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 964 77.8
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 1000 75.7
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 964 77.9
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1497.3 955 79.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 972 76.7
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 970 76.1
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 945 78.2
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1492.6 947 77.9
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 941 77.7
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 941 77.7
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 941 77.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 940 77.0
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 941 77.5
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 957 77.2
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 940 76.9
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 941 77.6
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 940 76.7
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 940 76.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 957 77.0
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1471.8 940 76.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1471.8 962 75.1
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 962 75.2
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 941 77.4
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 939 77.1
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 976 75.4
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 965 75.9
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 958 76.1
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1462.6 940 77.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1458.4 956 76.3
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1456.8 969 76.5
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 954 75.6
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1429.8 952 74.9
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1428.3 953 74.9
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1400.2 953 72.0
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1397.9 944 72.1
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1370.1 833 81.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1359.4 937 72.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1342.0 950 72.3
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1324.3 965 68.5
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1310.0 848 77.1
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1308.9 853 77.0
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1197.6 733 80.5
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1196.0 997 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1184.9 963 61.4
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1178.3 961 64.4
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1140.9 707 80.1
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1119.0 1005 56.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1084.3 665 81.2
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1080.5 941 59.7
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 5.9e-311 1070.8 647 82.2
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 4.4e-274 948.3 713 65.9
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.3e-222 777.3 765 52.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 2.4e-216 756.5 463 80.3
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.1e-179 631.7 441 71.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.6e-129 466.1 303 71.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.8e-110 404.8 1304 25.1
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 8.9e-110 402.5 635 39.8
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.0e-81 309.3 202 72.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.1e-70 270.8 207 69.6
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.1e-59 236.1 180 67.2
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 5.7e-56 223.8 300 45.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 2.4e-54 218.4 134 83.6
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.4e-51 209.1 125 80.8
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 8.2e-39 166.8 139 62.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.5e-36 156.8 201 41.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.7e-29 135.2 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.7e-15 88.2 80 61.2
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 3.2e-06 58.5 45 66.7


User provided reference genes

Program Settings