Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1690.2 901 100.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1506.1 920 88.5
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1500.3 878 91.8
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1409.0 872 84.5
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1403.3 872 84.9
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1389.0 873 84.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1387.1 873 83.3
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1384.8 872 84.4
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1384.0 873 83.7
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1379.8 873 84.3
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1377.5 872 83.7
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1369.0 875 81.7
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1367.4 873 83.2
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1364.0 873 82.7
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1363.2 873 82.1
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1362.1 873 82.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1359.7 903 80.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1357.8 873 81.2
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1355.1 846 81.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1354.0 878 79.8
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1354.0 873 80.3
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1351.3 875 81.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1350.9 932 77.8
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1348.6 890 80.7
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1348.2 874 81.8
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1346.6 875 81.0
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1345.9 881 78.1
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1345.1 889 81.2
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1344.3 873 81.8
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1343.2 875 81.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1340.1 875 81.3
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1338.9 877 80.7
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1336.2 877 81.4
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1335.9 875 80.5
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1333.2 876 80.5
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1332.8 881 81.0
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1332.0 873 81.1
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1331.6 876 80.4
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1329.7 873 80.8
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1328.9 875 80.8
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1328.2 873 79.2
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1327.8 873 80.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1327.4 927 77.6
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1326.2 872 80.4
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1324.7 882 78.6
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1322.8 860 80.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1322.4 822 84.5
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1320.4 876 79.8
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1317.0 872 78.7
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1316.6 885 79.3
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1315.1 872 78.7
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1314.3 900 77.2
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1308.5 873 79.2
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1307.7 873 79.4
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1307.0 884 77.9
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1306.2 879 79.9
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1305.4 878 79.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1305.0 901 75.1
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1302.0 855 80.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1301.2 872 79.0
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1300.0 873 78.0
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1299.6 875 79.2
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1298.1 879 77.8
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1295.8 878 79.5
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1295.4 872 77.4
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1290.8 872 76.7
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1290.8 877 78.1
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1289.6 889 77.8
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1287.3 843 79.1
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1281.2 872 76.6
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1278.5 877 77.3
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1274.2 881 77.5
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1273.5 760 91.1
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1267.7 872 77.4
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1265.4 873 75.5
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1261.1 872 76.1
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1255.0 872 76.4
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1253.8 852 77.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1251.1 872 74.8
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1251.1 882 74.0
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1250.7 872 75.5
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1248.8 872 75.9
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1245.0 835 77.2
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1240.3 872 73.7
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1240.3 872 73.7
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1239.9 872 74.8
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1234.2 976 69.9
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1233.8 1106 64.5
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1229.5 873 74.6
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1227.6 880 75.8
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1225.3 872 73.1
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1225.3 861 74.9
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1225.3 861 74.9
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1223.8 873 74.2
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1223.8 873 74.2
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1213.7 860 73.4
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1213.0 853 74.9
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1206.4 855 75.6
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1200.7 858 72.4
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1195.6 869 74.0
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1182.5 790 80.0
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1178.7 841 74.9
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1164.1 873 73.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1163.3 876 73.6
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1156.7 877 70.6
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1136.7 931 67.0
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-308 1063.1 809 69.3
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 4.5e-297 1024.6 861 61.3
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 7.4e-231 804.7 713 62.6
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.9e-223 780.0 460 95.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.7e-219 766.9 558 77.6
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.3e-206 721.8 407 84.8
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 8.0e-193 678.3 378 89.4
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 4.1e-189 666.0 536 64.6
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.0e-171 608.2 936 42.9
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.4e-168 597.8 482 70.1
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.4e-157 560.5 377 75.6
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-154 551.6 294 91.2
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 9.2e-141 505.4 313 87.2
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-140 505.0 288 82.3
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 8.7e-131 472.2 884 38.6
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-124 451.1 309 75.1
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 5.8e-119 433.0 237 88.6
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 7.4e-98 362.8 560 44.6
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.8e-96 358.2 938 30.5
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.9e-94 350.9 561 43.5
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.3e-88 330.1 220 76.8
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.6e-87 327.8 220 76.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 8.5e-86 322.8 181 86.2
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-85 320.9 181 84.5
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-85 320.9 181 84.5
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 6.1e-84 316.6 174 88.5
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 2.6e-82 311.2 223 72.2
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.7e-73 282.0 340 54.7
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.6e-63 248.8 202 64.4
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 3.6e-60 237.7 119 95.8
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 3.4e-58 231.1 134 87.3
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.9e-57 227.3 163 70.6
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.0e-54 217.2 214 64.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.6e-54 216.9 153 71.9
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 1.0e-51 209.5 319 41.4
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.5e-50 203.4 139 69.8
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 2.4e-40 171.8 120 68.3
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.3e-38 165.2 96 85.4
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.9e-33 148.3 96 78.1
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 8.3e-33 146.7 83 84.3
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.7e-31 141.7 77 88.3
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 1.3e-30 139.4 119 72.3
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.5e-29 136.0 119 62.2
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 6.2e-28 130.6 62 91.9
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.4e-25 120.2 72 79.2
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 2.4e-24 118.6 87 69.0
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.5e-21 109.4 65 86.2
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 7.3e-21 107.1 83 59.0
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 7.6e-18 97.1 71 67.6
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 2.9e-17 95.1 48 89.6
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 4.9e-17 94.4 57 78.9
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 8.4e-17 93.6 59 84.7
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 5.4e-16 90.9 69 63.8
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.6e-15 89.4 57 73.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 3.5e-15 88.2 57 71.9
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 1.0e-14 86.7 46 80.4
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-13 83.2 56 69.6
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 7.3e-13 80.5 119 43.7
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 2.1e-12 79.0 46 84.8
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 4.9e-09 67.8 150 36.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.1e-08 66.6 42 71.4
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 9.3e-08 63.5 47 55.3
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 3.0e-06 58.5 53 64.2
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 8.7e-06 57.0 149 34.2


User provided reference genes

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