Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.6e-108 393.7 221 100.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.5e-63 246.9 202 72.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.5e-63 246.9 202 72.8
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.2e-63 245.7 191 74.9
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 3.2e-63 245.7 202 72.3
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 5.5e-63 245.0 202 73.3
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.0e-61 240.7 195 75.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 7.0e-58 228.0 207 71.5
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.9e-55 219.9 202 67.3
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 9.4e-55 217.6 204 67.2
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.2e-54 217.2 203 68.0
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-54 217.2 203 68.0
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 8.0e-54 214.5 203 66.0
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.4e-53 213.8 203 66.0
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.8e-53 213.4 201 67.2
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.3e-53 213.0 204 68.1
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 3.0e-53 212.6 197 66.0
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 4.0e-53 212.2 204 65.2
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 8.8e-53 211.1 204 65.7
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.2e-52 210.7 204 65.7
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.2e-52 210.7 204 65.7
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.0e-52 209.9 203 67.5
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.6e-52 209.5 203 65.0
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.6e-52 209.5 202 65.3
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 5.7e-52 208.4 192 67.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 7.5e-52 208.0 185 64.3
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 7.5e-52 208.0 204 64.2
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 9.8e-52 207.6 204 65.2
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.2e-51 206.5 203 64.5
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.2e-51 206.5 204 64.7
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.3e-51 204.9 204 65.2
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 6.3e-51 204.9 196 63.8
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 8.3e-51 204.5 201 60.7
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.1e-50 204.1 205 63.9
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.8e-50 203.4 200 64.5
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.1e-50 202.6 201 62.7
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 5.4e-50 201.8 216 58.3
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 9.1e-50 201.1 201 62.2
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.2e-49 200.7 201 62.7
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.6e-49 200.3 200 60.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.0e-49 199.9 215 61.4
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.0e-49 199.9 203 62.1
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.5e-49 198.7 199 60.3
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 4.5e-49 198.7 204 58.3
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 5.9e-49 198.4 146 72.6
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 7.7e-49 198.0 203 61.6
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 7.7e-49 198.0 203 62.1
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.0e-48 197.6 200 63.0
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.3e-48 197.2 204 63.2
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.3e-48 197.2 201 61.7
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.3e-48 197.2 203 64.5
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.3e-48 197.2 203 61.1
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 2.9e-48 196.1 203 59.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 3.8e-48 195.7 205 60.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 8.5e-48 194.5 204 60.3
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 8.5e-48 194.5 205 59.0
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-47 194.1 205 59.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.5e-47 193.7 194 66.5
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.9e-47 193.4 201 60.2
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.9e-47 193.4 201 61.2
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.5e-47 193.0 204 63.2
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.5e-47 193.0 246 54.1
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.2e-47 192.6 199 60.8
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 4.2e-47 192.2 197 60.9
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 5.5e-47 191.8 201 60.7
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 2.1e-46 189.9 202 58.9
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.7e-46 189.5 193 62.7
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 3.6e-46 189.1 198 63.6
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.1e-46 188.3 200 62.5
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 6.1e-46 188.3 200 62.5
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 8.0e-46 188.0 200 63.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.0e-46 188.0 200 62.0
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.0e-45 187.6 203 61.6
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.4e-45 187.2 207 54.6
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.4e-45 187.2 202 59.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.8e-45 186.8 200 62.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.3e-45 186.4 200 62.0
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 4.0e-45 185.7 200 62.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.2e-45 185.3 203 63.1
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.2e-45 185.3 204 58.8
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.8e-45 184.9 203 63.1
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 6.8e-45 184.9 199 57.8
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.8e-45 184.5 137 73.7
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.2e-44 184.1 199 57.3
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.5e-44 183.7 199 57.8
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-44 183.7 203 62.6
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 3.4e-44 182.6 205 60.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.4e-44 182.6 146 67.8
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.4e-44 182.2 139 71.2
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 7.5e-44 181.4 200 61.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 7.5e-44 181.4 200 61.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 7.5e-44 181.4 202 60.9
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 7.5e-44 181.4 198 60.6
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.8e-44 181.0 184 60.9
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.3e-43 180.6 199 56.3
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.3e-43 180.6 143 68.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.2e-43 179.9 200 61.0
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.8e-43 179.5 201 56.7
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.7e-43 179.1 203 56.7
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 4.9e-43 178.7 209 51.7
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.9e-43 178.7 203 57.1
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 8.3e-43 177.9 205 59.5
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 8.3e-43 177.9 209 53.1
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.1e-42 177.6 201 59.7
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.4e-42 176.4 201 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.6e-41 173.7 136 64.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 3.5e-41 172.6 193 60.1
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.5e-41 172.2 136 63.2
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 7.7e-41 171.4 196 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.0e-40 171.0 129 66.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-39 167.5 157 61.1
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 3.3e-39 166.0 109 78.0
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 3.6e-38 162.5 170 63.5
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.7e-38 162.2 160 65.6
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 6.8e-37 158.3 226 52.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.2e-36 157.5 138 59.4
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.7e-35 153.7 145 59.3
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.4e-34 150.6 191 56.0
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.4e-34 149.8 123 65.9
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.0e-29 134.4 146 55.5
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.2e-28 131.0 222 48.6
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.0e-28 130.2 150 52.7
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.4e-28 129.4 117 63.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.5e-28 128.3 122 65.6
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 6.6e-24 115.2 104 59.6
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.9e-23 113.6 209 39.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 6.2e-22 108.6 156 44.9
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.3e-19 100.9 134 47.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 5.4e-18 95.5 279 35.5
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.6e-16 88.6 132 46.2
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 6.8e-13 78.6 207 35.7
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.6e-06 57.4 95 45.3
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 3.6e-06 56.2 35 82.9


User provided reference genes

Program Settings