Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1886.7 947 100.0
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1835.5 955 96.5
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1779.6 955 93.5
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1778.8 955 93.2
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1761.1 955 92.6
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1760.7 955 92.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1709.9 953 91.3
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1618.2 963 83.5
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1584.3 953 82.8
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1581.2 957 82.3
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 958 81.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 958 81.3
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 968 80.9
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 958 80.8
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 962 80.6
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 962 80.6
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 969 80.9
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.3 955 81.4
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1557.3 958 80.8
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 946 81.6
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 961 81.2
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1555.4 962 79.7
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 951 81.1
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 964 80.5
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 939 82.0
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 961 79.6
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1544.3 963 80.1
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 956 80.3
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 948 80.8
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 948 81.3
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 958 80.9
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 958 79.9
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1536.9 943 80.6
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 943 80.5
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 952 80.3
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 961 79.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1532.3 950 79.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1532.3 940 80.9
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 947 79.8
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 937 81.1
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 942 80.7
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 940 80.5
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 962 78.6
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 940 80.2
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 957 78.8
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 956 79.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 956 79.7
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 953 79.1
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 972 77.9
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 958 79.6
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 965 78.1
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1511.5 950 79.4
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 948 79.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 972 78.1
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1510.0 942 79.7
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1509.2 965 78.0
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 970 79.4
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 972 77.9
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 967 77.8
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 964 77.9
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 972 77.3
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 971 77.9
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 954 77.6
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 968 77.4
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1493.8 968 77.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 940 79.6
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 968 77.0
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 963 77.7
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 970 75.8
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 1000 75.4
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 947 77.6
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 964 77.1
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 971 76.3
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 961 77.4
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 953 78.5
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1479.2 945 77.7
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 941 77.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 941 77.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1468.4 941 76.9
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 944 76.9
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 941 77.0
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 941 76.8
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 941 76.8
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1463.0 957 76.8
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 941 76.5
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 941 76.5
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1458.4 941 76.4
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1457.6 954 76.2
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 944 76.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 962 74.6
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1456.4 962 74.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1455.7 957 76.4
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1453.7 939 76.5
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1452.2 965 75.8
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1450.6 967 75.3
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1448.3 940 76.4
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1446.0 969 76.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1441.0 956 75.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1439.1 953 75.0
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1419.8 953 74.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1413.7 951 74.7
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1388.6 943 71.8
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1386.7 953 71.5
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1350.1 833 80.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1348.6 937 72.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1330.5 950 72.2
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1308.1 964 68.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1298.5 851 76.6
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1297.3 845 76.9
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1199.5 732 80.3
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1183.3 997 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1172.5 964 61.5
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1166.4 961 64.0
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1140.6 707 80.2
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1108.6 1005 56.2
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1079.7 935 59.9
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 3.2e-311 1071.6 665 80.6
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 3.3e-306 1055.0 630 83.0
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 9.7e-274 947.2 716 66.5
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.9e-222 776.2 765 52.8
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.4e-210 736.1 463 78.8
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.6e-180 636.3 441 72.1
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.1e-123 447.2 303 70.0
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 5.2e-110 403.3 1091 27.1
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.4e-109 400.2 635 39.2
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 4.9e-76 290.4 202 69.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.3e-70 270.4 207 70.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.8e-60 237.7 180 69.4
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 3.3e-56 224.6 298 46.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.8e-54 218.8 134 84.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.2e-51 207.6 125 80.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 8.2e-39 166.8 139 62.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.5e-36 156.8 201 41.8
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.0e-28 133.3 64 93.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.7e-15 88.2 80 61.2
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 3.1e-06 58.5 45 66.7


User provided reference genes

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