Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 2103.2 1040 100.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1987.2 1040 93.8
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1924.1 1044 90.4
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1917.1 1040 90.3
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1910.6 1044 90.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1906.3 1044 89.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1704.5 1045 80.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1657.5 1046 77.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1656.3 1045 77.6
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1637.1 1045 77.0
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1636.3 1045 77.1
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1633.2 1046 76.5
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1613.6 1042 76.3
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1604.3 1045 74.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1604.0 1147 70.1
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1586.2 1044 73.6
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1580.5 1044 73.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1568.1 1045 72.8
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1567.0 1044 72.7
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1565.8 1046 73.2
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1563.5 1044 72.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1560.4 1044 72.4
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1560.4 1134 68.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1556.6 1043 72.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1552.7 1044 72.1
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1550.0 1044 71.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1546.6 1045 71.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1545.0 1044 71.7
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1539.2 1045 71.6
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1536.9 1043 70.5
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1531.2 1053 70.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1530.8 1043 72.3
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1527.7 1044 69.9
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1527.3 1044 70.9
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1526.9 1046 71.8
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1526.9 1043 70.2
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1526.9 1043 71.5
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1525.0 1044 70.2
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1517.7 1044 70.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1516.1 1044 70.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1515.4 1044 70.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1514.2 1044 70.3
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1513.8 1045 68.9
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1509.6 1046 69.8
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1506.1 1043 70.3
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1501.1 1042 68.7
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1500.3 1045 69.9
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1499.2 1043 70.0
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1497.6 1046 69.5
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1494.6 1041 69.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1493.8 1045 69.4
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1492.6 1042 68.2
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1489.2 1042 68.3
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1488.8 1045 69.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1486.5 1043 68.6
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1484.2 1041 69.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1478.8 1043 67.9
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1477.2 1042 67.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1476.8 1012 70.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1473.8 1043 67.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1473.0 1042 67.7
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1472.2 1043 68.1
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1471.4 1044 69.3
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1465.7 1044 68.4
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1459.1 1120 63.6
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1442.2 1052 66.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1428.7 1000 69.3
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1426.4 1041 67.0
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1414.8 1040 66.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1411.0 1042 65.8
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1406.3 1043 65.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1404.4 1043 65.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1404.4 1043 65.8
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1402.5 1042 65.7
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1401.3 1042 64.9
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1400.2 1045 65.9
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1396.3 1042 65.3
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1395.9 1042 64.6
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1394.4 1045 65.6
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1393.6 1045 65.6
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1387.1 1040 66.9
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1386.3 1044 65.5
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1384.0 1063 64.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1379.8 1042 64.9
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1373.6 1043 64.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1367.8 1039 65.0
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1360.1 1000 67.3
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1328.9 954 69.1
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1318.5 832 77.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1290.8 1040 61.5
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1227.6 940 64.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1221.8 1035 57.6
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1198.0 878 65.1
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1197.2 1043 57.0
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1186.8 778 73.9
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1177.9 801 72.5
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1170.6 1065 56.1
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1166.4 830 68.8
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1158.7 950 61.7
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1145.2 943 61.7
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1144.4 833 67.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1105.9 1043 54.1
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1089.7 943 59.7
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 7.5e-304 1047.3 1040 53.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 8.4e-287 990.7 1044 52.5
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.7e-285 985.7 691 69.2
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.5e-277 958.7 1075 49.1
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 4.2e-270 935.3 1086 48.5
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.0e-268 930.6 1078 47.6
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.0e-268 929.1 1045 48.4
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 3.5e-261 905.6 939 50.4
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.9e-254 883.2 1092 46.5
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 1.3e-250 870.5 577 74.7
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 2.8e-250 869.4 532 79.7
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 4.1e-233 812.4 532 76.9
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.2e-218 763.5 552 67.4
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 1.8e-217 760.4 502 72.5
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.7e-213 746.5 501 72.3
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.7e-207 727.2 619 56.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.8e-188 664.1 1219 35.3
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.1e-143 513.1 394 64.7
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 4.5e-99 367.1 213 85.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.7e-85 320.9 1220 26.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 7.3e-81 306.6 1093 25.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.1e-56 225.3 147 77.6
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 6.8e-55 220.3 136 80.1
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.7e-53 215.7 245 49.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 5.1e-50 204.1 132 76.5
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 4.6e-35 154.5 91 81.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 3.3e-25 121.7 78 70.5
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 5.7e-17 94.4 46 95.7
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.9e-12 79.3 67 52.2
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 7.2e-12 77.4 71 50.7
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 9.4e-12 77.0 143 34.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 3.6e-11 75.1 50 70.0
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.8e-10 72.8 169 28.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.9e-10 71.6 95 41.1
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 6.7e-10 70.9 44 77.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.8e-08 65.5 198 31.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.7e-08 65.1 189 31.2
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 4.8e-08 64.7 176 30.1
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.4e-07 62.4 242 26.9
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 5.3e-07 61.2 191 27.2
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 6.9e-07 60.8 78 43.6
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 6.9e-07 60.8 94 39.4
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 9.1e-07 60.5 135 31.1
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 2.0e-06 59.3 152 29.6
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.9e-06 57.8 166 32.5


User provided reference genes

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